Job Description P03004 Confidence 97.61% Date Thu Jan 5 10:57:49 GMT 2012 Rank 163 Aligned Residues 177 % Identity 12% Template c2gnoA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase iii, gamma subunit-related protein; PDBTitle: crystal structure of a dna polymerase iii, gamma subunit-related2 protein (tm0771) from thermotoga maritima msb8 at 2.00 a resolution Resolution 2.00 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																	.							.	.	.	.	.	.
Query SS confidence																																																	.							.	.	.	.	.	.
Query Sequence		A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	.	K	V	V	Y	M	H	.	.	.	.	.	.	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F
Query Conservation																																																	.							.	.	.	.	.	.
Alig confidence															.	.																																	.							.	.	.	.	.	.																		.	.	.
Template Conservation															.	.																																																															.	.	.
Template Sequence		Q	L	E	T	L	K	R	I	I	E	K	S	E	.	.	G	I	S	I	L	I	N	G	E	D	L	S	Y	P	R	E	V	S	L	E	L	P	E	Y	V	E	K	F	P	P	K	A	S	D	V	L	E	I	D	P	E	G	E	N	I	G	I	D	D	I	R	T	I	K	D	F	L	N	Y	S	P	E	.	.	.
Template Known Secondary structure												T		S	.	.	S								S	S	S	S															T	S				T	T	T							S	S	S		B													T	S			S	.	.	.
Template Predicted Secondary structure															.	.																																																															.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	.	E	L	E	T
Query Conservation																																																																													.
Alig confidence		.	.	.																	.	.														.															.	.	.	.													.	.	.								.
Template Conservation		.	.	.																	.	.														.															.	.	.	.													.	.	.
Template Sequence		.	.	.	L	Y	T	R	K	Y	V	I	V	H	D	C	E	R	X	T	.	.	Q	Q	A	A	N	A	F	L	K	A	L	E	E	.	P	P	E	Y	A	V	I	V	L	N	T	R	R	W	.	.	.	.	H	Y	L	L	P	T	I	K	S	R	V	F	.	.	.	R	V	V	V	N	V	P	K	E	F	R	D
Template Known Secondary structure		.	.	.	S	S	S	S						T	T	G	G	G	B		.	.							T						S	.			T	T								S		G	.	.	.	.	G	G	S						T	T	S		.	.	.
Template Predicted Secondary structure		.	.	.																	.	.														.															.	.	.	.													.	.	.
Template SS confidence
					87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	K	E	K	I	G	D	L	W	E	E	L	P	L	L	E	R	D	F	K	T	A	L	E	A	Y	K	L	G	A	E	K	L	S	G	L	X	E	S	L	K	V
Template Known Secondary structure								T	T						G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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