Job Description P03004 Confidence 99.72% Date Thu Jan 5 10:57:49 GMT 2012 Rank 57 Aligned Residues 300 % Identity 13% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N
Query Conservation
Alig confidence									.	.	.																				.	.
Template Conservation									.	.	.																				.	.
Template Sequence		T	L	D	E	V	V	G	.	.	.	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	K	N	I	P	H	.	.	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I
Template Known Secondary structure		S	G	G	G			S	.	.	.									G	G	G	T	T	T	T					.	.							T	T	S	S														T	T			T	T	T						T	T	S	T	T	S	T	T	T	S	S
Template Predicted Secondary structure									.	.	.																				.	.
Template SS confidence
		15	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	.	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E
Query Conservation																.
Alig confidence																.												.	.													.	.																		.	.	.											.	.	.
Template Conservation																												.	.													.	.																		.	.	.											.	.	.
Template Sequence		K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	.	.	A	D	A	Q	A	A	L	R	R	T	M	E	.	.	M	Y	S	K	S	C	R	F	I	L	S	C	N	Y	V	S	R	.	.	.	I	I	E	P	I	Q	S	R	C	A	.	.	.	V	F	R	F	K
Template Known Secondary structure							S			T	T	T										T	G	G	G	S		.	.						T	T	G	G	G	T	S	.	.	S	S	S	S	S								S		G	G	G	.	.	.	S						T	T			.	.	.
Template Predicted Secondary structure																												.	.													.	.																		.	.	.											.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.				.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	I	T	I	D	F	V	R	E	A	L	R	D	L	L	A	L	Q	E	K	L	V	T
Query Conservation
Alig confidence																																																			.	.	.	.																							.	.	.	.	.
Template Conservation																																																			.	.	.	.																							.	.	.	.	.
Template Sequence		P	V	P	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	.	.	.	.	A	I	G	E	V	V	D	A	D	T	I	Y	Q	I	T	A	T	A	R	P	E	E	.	.	.	.	.
Template Known Secondary structure																		T	T	T			B													T	T														.	.	.	.	S	S	S	S		B									T	T							.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.																							.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	N	I	Q	K	T	V	A	E	Y	Y	K	I	K	V	A	D	L	L	S	K	R	R	S	R	S	V	A	R	P	R	Q	M	A	M	A	L	A	K	E	L	T	N	H	S	L	P	E	I	G	D	A	F	G	G	R	D	H	T	T	V	L	H	A	C	R	K	I	E	Q	L	R	E	E	S	H	D	I	K
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.
Template Sequence		M	T	E	L	I	Q	T	A	L	K	G	N	F	M	E	A	R	E	L	L	D	R	L	M	V	E	Y	G	M	S	G	E	D	I	V	A	Q	L	F	R	E	I	I	S	M	P	I	K	D	.	.	.	.	.	.	.	S	L	K	V	Q	L	I	D	K	L	G	E	V	D	F	R	L	T	E	G	A	N	E	R
Template Known Secondary structure												T																S																	S	S		S			.	.	.	.	.	.	.																				T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	F	S	N	L	I	R	T	L	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	L	D	A	Y	L	A	Y	L	S	T
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions