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Job DescriptionP03004
Confidence99.83%DateThu Jan 5 10:57:49 GMT 2012
Rank39Aligned Residues250
% Identity14%Templatec2c9oC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:ruvb-like 1; PDBTitle: 3d structure of the human ruvb-like helicase ruvbl1
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  AAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNG
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Template Sequence  KSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE
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GGGTGGGTT

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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   189190.........200.........210.........220........ .230.........240.........250..
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Query Sequence  IMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRS. . . . . . . . . VDALLIDDIQFFANKERSQEEFFH. . . . . . .
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Template Sequence  L. . . GSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKKKEIIQDVTLHDLDVAGEINKVVNKYIDQGIAELV
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TTS
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   87 ..90.........100.........110.........120.........130.........140.........150.........160...
 
   253......260.........270 .........280.........290.........300...
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Query Sequence  . . . . . . . . . . . . . . . . . . . TFNALLEGNQQIILTSDR. . . . . . . . . . YPKEINGVEDRLKSRFGWGLTVAIEPPELETRV
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Template Sequence  PGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM. . . IIRTMLYTPQEMK
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GGG
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   296...300.........310.........320.........330.........340.........350......... 360.........370..
 
   304.....310.........320......... 330.........340.........350... ......360....
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Query Sequence  AILMKKADENDIRLPGEVAFFIAKRL. RSNVRELEGALNRVIANANFTGRA. ITIDFVREALR
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Template Sequence  QIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE
Template Known Secondary structure  TT

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   373......380.........390.........400.........410.........420.........430.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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