Job Description P03004 Confidence 99.70% Date Thu Jan 5 10:57:49 GMT 2012 Rank 60 Aligned Residues 210 % Identity 16% Template c1xxhB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex Resolution 3.45 Å

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		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence									.	.	.															.																																																				.	.	.	.
Template Conservation									.	.	.															.
Template Sequence		T	F	A	D	V	V	G	.	.	.	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	.	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D
Template Known Secondary structure		S	G	G	G			S	.	.	.														T	.	T				S							S	T	T	S	S													S		T	T		S		S	S			S		S									T			T	T
Template Predicted Secondary structure									.	.	.															.
Template SS confidence
		14	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
										213	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	.	.	.	.	.	.	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V
Query Conservation		.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.															.	.	.	.	.	.																.	.															.														.	.	.	.
Template Conservation																																													.	.															.														.	.	.	.
Template Sequence		L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	.	.	R	H	S	F	N	A	L	L	K	T	L	E	E	P	.	P	E	H	V	K	F	L	L	A	T	T	D	P	.	.	.	.	Q	K	L
Template Known Secondary structure							S	S		S	T	T	T	T								T				S		S	S	S	S								T	G	G	G			.	.													S		.		T	T								S		T	.	.	.	.	T	S	S
Template Predicted Secondary structure																																													.	.															.														.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	I	T	I	D	F
Query Conservation
Alig confidence											.	.	.																																													.	.	.
Template Conservation											.	.	.																																													.	.	.
Template Sequence		P	V	T	I	L	S	R	C	L	.	.	.	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	.	.	.	D	A	L	S	L	T	D	Q	A	I	A	S	G	D	G	Q	V	S	T	Q	A
Template Known Secondary structure								T	S		.	.	.																						T	T	T			B												S		S				.	.	.														T	T		B
Template Predicted Secondary structure											.	.	.																																													.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		359	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	A	M	L
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions