Job Description P03004 Confidence 99.61% Date Thu Jan 5 10:57:49 GMT 2012 Rank 72 Aligned Residues 221 % Identity 14% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		T	Y	R	S	N	V	N	V	K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence											.											.	.	.																	.	.																																				.	.	.	.
Template Conservation											.											.	.	.																	.	.
Template Sequence		P	W	V	E	K	Y	R	P	K	.	N	L	D	E	V	T	A	Q	D	H	.	.	.	A	V	T	V	L	K	K	T	L	K	S	A	N	L	P	H	.	.	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D
Template Known Secondary structure							T			S	.	S	T	T	T			S			T	.	.	.	T								T	T		T	T				.	.						S	T	T	S	S																			T	T	S						S	S	S
Template Predicted Secondary structure											.											.	.	.																	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
								203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																													.	.
Query SS confidence		.	.	.	.	.	.																													.	.
Query Sequence		.	.	.	.	.	.	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	.	.	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E
Query Conservation		.	.	.	.	.	.																													.	.
Alig confidence		.	.	.	.	.	.																													.	.												.	.													.	.
Template Conservation																																																	.	.													.	.
Template Sequence		E	R	G	I	S	I	V	R	E	K	V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	.	.	A	D	A	Q	S	A	L	R	R	T	M	E	.	.	T	Y	S	G	V	T	R	F	C	L	I	C	N	Y	V	T	R
Template Known Secondary structure									T	T								S							T	T					S				S							T	T	G	G	G	S		.	.													.	.		T	T	T	T								S		G	G	G
Template Predicted Secondary structure																																																	.	.													.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	.
Query Conservation																																																																																	.
Alig confidence		.	.	.											.	.	.																																																																.
Template Conservation		.	.	.											.	.	.
Template Sequence		.	.	.	I	I	D	P	L	A	S	Q	C	S	.	.	.	K	F	R	F	K	A	L	D	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	A	G	D	L	R	R	G	I	T	L	L	Q	S	A	S	K	G	A	Q	Y	L	G	D	G	K
Template Known Secondary structure		.	.	.	S								S		.	.	.																						T	T	T															T	S	S												T									S
Template Predicted Secondary structure		.	.	.											.	.	.
Template SS confidence
					176	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
			354	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	I	T	I	D	F	V	R	E	A	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		N	I	T	S	T	Q	V	E	E	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions