Job Description P03004 Confidence 99.68% Date Thu Jan 5 10:57:49 GMT 2012 Rank 63 Aligned Residues 221 % Identity 14% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	R	S	N	V	N	V	K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F
Query Conservation
Alig confidence											.								.	.	.																				.	.
Template Conservation											.								.	.	.																				.	.
Template Sequence		P	W	V	E	K	Y	R	P	E	.	T	L	D	E	V	Y	G	.	.	.	Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	.	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	Y	S	N	M	V	L	E	L	N	A	S	D	D
Template Known Secondary structure							T			S	.	S	G	G	G			S	.	.	.														T	T					.	.						S	S	S	S	S														T	T	S										T	T	S
Template Predicted Secondary structure											.								.	.	.																				.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	.	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R
Query Conservation																										.
Alig confidence																										.												.	.													.	.																		.	.	.
Template Conservation																																						.	.													.	.																		.	.	.
Template Sequence		R	G	I	D	V	V	R	N	Q	I	K	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	.	.	N	A	A	Q	N	A	L	R	R	V	I	E	.	.	R	Y	T	K	N	T	R	F	C	V	L	A	N	Y	A	H	K	.	.	.	L	T	P	A	L	L	S	Q
Template Known Secondary structure			S						T								S			S	S	S		S							T	T	G	G	G	S		.	.													.	.		T	T	T	T								S		G	G	G	.	.	.	S						T	T
Template Predicted Secondary structure																																						.	.													.	.																		.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	.	I	T	I	D	F	V	R	E	A	L
Query Conservation																																																																						.
Alig confidence				.	.	.																																																																.
Template Conservation				.	.	.
Template Sequence		C	T	.	.	.	R	F	R	F	Q	P	L	P	Q	E	A	I	E	R	R	I	A	N	V	L	V	H	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	G	D	M	R	R	V	L	N	V	L	Q	S	C	K	A	T	L	D	N	P	D	E	D	E	I	S	D	D	V	I	Y	E	C	C
Template Known Secondary structure		S		.	.	.																						T	T	T			B													T	T									T	T	T	T	T	T	T	T		S	S	S				B									T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		161	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions