Job Description P03004 Confidence 99.83% Date Thu Jan 5 10:57:49 GMT 2012 Rank 40 Aligned Residues 230 % Identity 17% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160																.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		K	Y	A	P	T	N	L	Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	.	.	G	Y	D	I	L
Template Known Secondary structure			T			S	S	G	G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	.	.	T
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370						.	.	.	.	.
		200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure						.	.	.	.	.	.																												.	.	.
Query SS confidence						.	.	.	.	.	.																												.	.	.
Query Sequence		Y	M	H	S	.	.	.	.	.	.	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	.	.	.	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R
Query Conservation						.	.	.	.	.	.																												.	.	.
Alig confidence						.	.	.	.	.	.																												.	.	.												.	.
Template Conservation																																																					.	.
Template Sequence		E	Q	N	A	S	D	V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	.	.	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	L	I	L	I	C	N	E
Template Known Secondary structure					T	T	S										T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	T	T	S							S	G	G	G			.	.	T	T	S	T	T													S	S							S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T
Query Conservation
Alig confidence			.	.	.	.	.	.																																																										.	.	.
Template Conservation			.	.	.	.	.	.																																																										.	.	.
Template Sequence		R	.	.	.	.	.	.	N	L	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	R	G	D	I	R	.	.	.	Q	V	I	N	L	L	S	T	I	S	T	T	T
Template Known Secondary structure		T	.	.	.	.	.	.	T	S	S	T	T	G	G	G	T	T	T	S																									T					T	T									T	T	T				.	.	.							T						S
Template Predicted Secondary structure			.	.	.	.	.	.																																																										.	.	.
Template SS confidence
		458							.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.				.	.	.	.	520	.	.	.	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	I	T	I	D	F	V	R	E	A	L	R	D	L	L	A	L	Q	E	K	L	V	T	I	D	N	I	Q	K	T	V
Query Conservation
Alig confidence				.												.	.
Template Conservation				.												.	.
Template Sequence		K	T	.	I	N	H	E	N	I	N	E	I	S	K	.	.	A	W	E	K	N	I	A	L	K	P	F	D	I	A	H	K	M
Template Known Secondary structure		S		.			T	T								.	.				T	T	T	T	S
Template Predicted Secondary structure				.												.	.
Template SS confidence
		529	530		.	.	.	.	.	.	.	.	.	540	.			.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions