Job Description P03004 Confidence 99.65% Date Thu Jan 5 10:57:49 GMT 2012 Rank 65 Aligned Residues 214 % Identity 14% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence							.	.																																													.	.																								.	.	.	.
Template Conservation							.	.																																													.	.
Template Sequence		M	I	G	S	S	.	.	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	.	.	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G
Template Known Secondary structure							.	.															S	T	T									T	T	S	S												S	S		S	.	.	S	S								T	T											T				S	S
Template Predicted Secondary structure							.	.																																													.	.
Template SS confidence
		141	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
					218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260										.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.
Predicted Secondary structure		.	.	.																																												.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence		.	.	.																																												.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		.	.	.	A	I	E	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	.	.	.	.	.	.	.	.	.	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	.	.	.	.	G	V	E	D	R
Query Conservation		.	.	.																																												.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence		.	.	.																									.	.																		.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																													.	.
Template Sequence		A	F	T	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	.	.	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G	R	F	R	Q	D
Template Known Secondary structure		S								T	T	G	G	G	T	T	S							G	G	G			.	.													S	S					S	S	S															S	S									T	S	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.									.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.																												.
Query SS confidence																			.	.	.	.	.	.	.	.																												.
Query Sequence		L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	.	.	.	.	.	.	.	.	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	.	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R
Query Conservation																			.	.	.	.	.	.	.	.																												.
Alig confidence																			.	.	.	.	.	.	.	.																												.																								.	.
Template Conservation																																																																														.	.
Template Sequence		L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V	L	L	T	.	.	G	E
Template Known Secondary structure								S								G	G	G	G	G	G	G																T	T						B														T	T																		.	.	S	S
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.
		353	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	I	D	F	V	R	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	I	S	E	R	E	L	P	L	A	I
Template Known Secondary structure		S	B		G	G	G	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions