Job Description P03004 Confidence 99.82% Date Thu Jan 5 10:57:49 GMT 2012 Rank 42 Aligned Residues 207 % Identity 18% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																									.	.	.																																			.	.	.	.
Query SS confidence																																									.	.	.																																			.	.	.	.
Query Sequence		A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	.	.	.	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	.	.	.	.
Query Conservation																																									.	.	.																																			.	.	.	.
Alig confidence																																									.	.	.																																			.	.	.	.
Template Conservation
Template Sequence		K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E
Template Known Secondary structure														T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	S	T	T			S		B
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
			223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																			.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence		.																																			.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		.	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	.	.	.	.	.	.	.	.	.	.	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	.	.	.	N	G	V	E	D	R	L	K	S	R	F	G	W
Query Conservation		.																																			.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence		.																				.	.														.	.	.	.	.	.	.	.	.	.																				.	.	.													.
Template Conservation																						.	.																																																										.
Template Sequence		G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	.	.	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	.
Template Known Secondary structure							T	T	T	S						S	G	G	G			.	.														S					B	T			S													S	S								T	T	S	S									T	.
Template Predicted Secondary structure																						.	.																																																										.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.									.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.													.	.	.										.
Query SS confidence																		.	.	.	.	.	.	.	.													.	.	.										.
Query Sequence		G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	.	.	.	.	.	.	.	.	I	L	M	K	K	A	D	E	N	D	I	R	.	.	.	L	P	G	E	V	A	F	F	I	.	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	I	T	I
Query Conservation																		.	.	.	.	.	.	.	.													.	.	.										.
Alig confidence		.	.															.	.	.	.	.	.	.	.													.	.	.										.																								.	.
Template Conservation		.	.																																																																							.	.
Template Sequence		.	.	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L	F	S	E	.	.	G	K	F	I	D	R
Template Known Secondary structure		.	.	T								G	G	G																				T	T																	S			T	T																		.	.	S	S
Template Predicted Secondary structure		.	.																																																																							.	.
Template SS confidence
				302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.
		357	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	R	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	L	S	C	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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