Job Description P03004 Confidence 97.72% Date Thu Jan 5 10:57:49 GMT 2012 Rank 149 Aligned Residues 139 % Identity 14% Template c1ly1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase Resolution 2.00 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q
Query Conservation
Alig confidence																							.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	T	I	G	C	P	G	S	G	K	S	T	W	A	R	E	F	I	A	K	.	.	.	.	.	.	N	P	G	F	Y	N	I	N	R	D	D	Y	R	Q	S	I	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	E	R	D	E	Y	K	Y	T	K	K	K	E	G	I	V	T	G	M	Q	F
Template Known Secondary structure								T	T	S	S												.	.	.	.	.	.	S	T	T														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S			G	G	G
Template Predicted Secondary structure																							.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.							.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.														.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K
Query Conservation
Alig confidence																																																				.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		D	T	A	K	S	I	L	Y	G	G	D	S	V	K	G	V	I	I	S	D	T	N	L	N	P	E	R	R	L	A	W	E	T	F	A	K	E	Y	G	W	K	V	E	H	K	V	F	D	V	P	.	.	.	.	W	T	E	L	V	K	R	N	S	K	R	G	T	K	A	V	P	I	D	V	L	R	S	M	Y	K
Template Known Secondary structure									T	S		S	S								S				S															T												.	.	.	.									T	T		G	G	G
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		328	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		142	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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