Return to main results Retrieve Phyre Job Id

Job DescriptionP03004
Confidence99.45%DateThu Jan 5 10:57:49 GMT 2012
Rank89Aligned Residues158
% Identity15%Templatec1jr3E_
PDB info PDB header:transferaseChain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   162.......170.........180.........190....... ..200..... ....210....
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Query Sequence  GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK. . . . . . . . . . . . . . . . . . . VVYMHSER. . . . . . . . FVQDMVKAL
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Template Sequence  GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL
Template Known Secondary structure  S


S

TTSST
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SSS

S
STS

SS


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   21........30.........40.........50.........60.........70.........80.........90.........100
 
   215....220.........230.........240.........250.........260.........270.........280.........290....
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Query Sequence  QNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI
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Template Sequence  NEHAR. . . . . . LGGAKVVWVTDAALLT. . DAAANALLKTLE. . EPPAETWFFLATREPER. . . LLATLRSRCR. . . LHYL
Template Known Secondary structure  SS

T......TSS
S
GGGB
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   101.... ....110.........120. ........130... ......140.........150 .........160 ....
 
   295....300.........310.........320.........330.........340
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Query Sequence  EPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGAL
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Template Sequence  APPPEQYAVTWL. . . . . SREVTMSQDALLAALRLSAGSPGAALALF
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   165....170...... ...180.........190.........200.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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