Job Description P03004 Confidence 99.76% Date Thu Jan 5 10:57:49 GMT 2012 Rank 52 Aligned Residues 306 % Identity 14% Template c1iqpF_ PDB info PDB header:replication Chain: F: PDB Molecule:rfcs; PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus Resolution 2.80 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	T	Y	R	S	N	V	N	V	K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E
Query Conservation
Alig confidence													.								.	.	.																				.	.
Template Conservation													.								.	.	.																				.	.
Template Sequence		E	K	P	W	V	E	K	Y	R	P	Q	.	R	L	D	D	I	V	G	.	.	.	Q	E	H	I	V	K	R	L	K	H	Y	V	K	T	G	S	M	P	H	.	.	L	L	F	A	G	P	P	G	V	G	K	T	T	A	A	L	A	L	A	R	E	L	F	G	E	N	W	R	H	N	F	L	E	L	N	A	S
Template Known Secondary structure		S	S		G	G	G	T	S				.	S	G	G	G			S	.	.	.													T	T	T					.	.					S		T	T	S	S	T	T												G	G	G										T	T
Template Predicted Secondary structure													.								.	.	.																				.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		205	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	F	V	Q	.	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K
Query Conservation						.
Alig confidence						.																																		.	.													.	.																		.	.	.
Template Conservation																																								.	.													.	.																		.	.	.
Template Sequence		D	E	R	G	I	N	V	I	R	E	K	V	K	E	F	A	R	T	K	P	I	G	G	A	S	F	K	I	I	F	L	D	E	A	D	A	L	T	.	.	Q	D	A	Q	Q	A	L	R	R	T	M	E	.	.	M	F	S	S	N	V	R	F	I	L	S	C	N	Y	S	S	K	.	.	.	I	I	E	P	I	Q
Template Known Secondary structure		T	S	S													T	T	S			S	S	S		S								T	G	G	G	S		.	.													.	.		T	T	T	T								S		G	G	G	.	.	.	S
Template Predicted Secondary structure																																								.	.													.	.																		.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	I	T	I	D	F	V	R	E	A	L
Query Conservation
Alig confidence						.	.	.																																																							.	.	.	.
Template Conservation						.	.	.																																																							.	.	.	.
Template Sequence		S	R	C	A	.	.	.	I	F	R	F	R	P	L	R	D	E	D	I	A	K	R	L	R	Y	I	A	E	N	E	G	L	E	L	T	E	E	G	L	Q	A	I	L	Y	I	A	E	G	D	M	R	R	A	I	N	I	L	Q	A	A	A	.	.	.	.	A	L	D	K	K	I	T	D	E	N	V	F	M	V	A
Template Known Secondary structure		T	T			.	.	.																								T																T	T														.	.	.	.	T	T		S
Template Predicted Secondary structure						.	.	.																																																							.	.	.	.
Template SS confidence
		159	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.				400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		R	D	L	L	A	L	Q	E	K	L	V	T	I	D	N	I	Q	K	T	V	A	E	Y	Y	K	I	K	V	A	D	L	L	S	K	R	R	.	.	.	S	R	S	V	A	R	P	R	Q	M	A	M	A	L	A	K	E	L	T	N	H	S	L	P	E	I	G	D	A	F	G	G	R	D	H	T	T	V	L	H	A
Query Conservation																																						.	.	.
Alig confidence			.	.	.	.	.	.	.	.																												.	.	.																										.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template Sequence		S	.	.	.	.	.	.	.	.	R	A	R	P	E	D	I	R	E	M	M	L	L	A	L	K	G	N	F	L	K	A	R	E	K	L	R	E	I	L	L	K	Q	G	L	S	G	E	D	V	L	V	Q	M	H	K	E	V	F	N	L	P	I	E	E	.	.	.	.	.	.	.	P	K	K	V	L	L	A	D	K
Template Known Secondary structure		T	.	.	.	.	.	.	.	.																	T																T															G	G	G	S					.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template SS confidence
		232									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.								.	.	290	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	K	I	E	Q	L	R	E	E	S	H	D	I	K	E	D	F	S	N	L	I	R	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	E	Y	N	F	R	L	V	E	G	A	N	E	I	I	Q	L	E	A	L	L	A	Q	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions