Job Description P39300 Confidence 99.66% Date Thu Jan 5 11:59:05 GMT 2012 Rank 14 Aligned Residues 217 % Identity 17% Template c3zq4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Resolution 3.00 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V	L	D	P	F	A	I	R	Q	I	D	A	V	L	A	T	H	D	H	N	D	H	I
Query Conservation
Alig confidence											.													.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation											.													.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		G	K	N	T	Y	A	V	Q	F	.	Q	D	E	I	V	L	I	D	A	G	I	K	.	.	.	.	.	.	.	.	.	.	F	P	E	D	E	L	L	G	I	D	Y	V	I	P	D	Y	T	Y	L	.	.	.	.	.	.	.	.	.	V	K	N	E	D	K	I	K	G	L	F	I	T	H	G	H	E	D	H	I
Template Known Secondary structure		S									.	T	T										B	.	.	.	.	.	.	.	.	.	.				T	T	S	T	T		S										.	.	.	.	.	.	.	.	.		T	T	G	G	G							S
Template Predicted Secondary structure											.													.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.											.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60										.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	.	.	.	.	.	W	G	V	P	K	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	D	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A
Query Conservation																																.	.	.	.	.
Alig confidence			.	.										.	.																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.										.	.																																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	G	I	P	Y	L	L	R	Q	V	.	.	N	I	P	V	Y	G	G	K	L	A	I	G	L	L	R	N	K	L	E	E	H	G	L	L	R	Q	T	K	L	N	I	I	G	E	D	D	I	V	K	F	R	K	T	A	V	S	F	F	R	T	T	H	S	I	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	.	.	T						T	T		.	.																						S	T	T	T	T	S							T	T						T	T									B		S	S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.										.	.																																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81			.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.								.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.															.	.
Query SS confidence																														.	.	.	.	.	.	.															.	.
Query Sequence		G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	.	.	.	.	.	.	.	S	H	Y	S	N	Y	Y	A	K	H	G	N	E	H	.	.	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G
Query Conservation																														.	.	.	.	.	.	.															.	.
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.															.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																											.
Template Sequence		.	.	.	.	.	.	.	.	.	D	S	Y	G	I	V	V	K	T	P	P	G	N	I	V	H	T	G	D	F	K	F	D	F	T	P	V	G	E	P	A	N	L	T	K	M	A	E	I	G	K	E	G	V	L	C	L	L	S	D	S	T	N	S	E	N	P	E	.	F	T	M	S	E	R	R	V	G	E	S	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S									T	T								S		B			S	S		S	S	S													T										T	T	T	T			S	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																											.
Template SS confidence
											146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.
		270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																								.
Query SS confidence					.	.	.	.																								.
Query Sequence		E	A	L	.	.	.	.	N	A	K	V	V	I	P	F	H	H	D	I	W	S	N	F	Q	A	D	P	Q	E	I	.	R	V	L	W	E	M	K	K	D	R	L	K	Y	G
Query Conservation					.	.	.	.																								.
Alig confidence					.	.	.	.									.	.	.	.												.
Template Conservation																	.	.	.	.
Template Sequence		H	D	I	F	R	K	V	D	G	R	I	I	F	A	T	.	.	.	.	F	A	S	N	I	H	R	L	Q	Q	V	I	E	A	A	V	Q	N	G	R	K	V	A	V	F	G
Template Known Secondary structure										S							.	.	.	.		T	T														T	T	T							S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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