Job Description P39300 Confidence 100.00% Date Thu Jan 5 11:59:05 GMT 2012 Rank 3 Aligned Residues 246 % Identity 13% Template c3rpcD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 Resolution 1.49 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence		T	F	A	M	W	W	L	G	C	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	.	.	.	.	.	.	.	F	V	L	D	P	F	A	I	R	Q
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence																		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	T	Q	Y	T	H	I	R	N	A	T	G	K	L	T	I	.	K	N	T	T	F	L	I	D	P	F	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	D	T	Y	P	G	F	E	G	T	F	N	Y	Q	Q	R	X	P	X	V	D	L	P	L	S	X	D	D	L	L	S	N
Template Known Secondary structure										T	T							.	T	T						S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		B				T	T	B	T	T	T	T	S		B		S	S			S	S							T	T
Template Predicted Secondary structure																		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.																			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	A	V	L	A	T	H	D	H	N	D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	W	G	V	P	K	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	D	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I
Query Conservation
Alig confidence																								.	.	.																							.	.							.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																							.	.							.	.														.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	A	V	V	V	T	H	T	H	L	D	H	W	D	D	T	A	I	N	S	I	.	.	.	P	K	S	L	P	I	F	V	Q	N	T	A	D	K	E	L	I	T	S	Q	G	F	.	.	I	D	V	R	I	I	.	.	F	E	S	L	E	F	N	G	I	T	L	R	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S				G	G	G	S								S	.	.	.		T	T	S					S	S										T	T		.	.	S						.	.	S	S					T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.																							.	.							.	.														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																						.	.	.	.										.																																	.	.	.
Query SS confidence																						.	.	.	.										.																																	.	.	.
Query Sequence		T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	.	.	.	.	V	N	Y	L	F	K	T	P	G	.	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K	H	G	N	E	H	Q	I	D	V	A	L	G	S	Y	G	.	.	.	E	N	P	R	G	I	T	D	K	M	T
Query Conservation																						.	.	.	.										.																																	.	.	.
Alig confidence		.																				.	.	.	.										.																																	.	.	.
Template Conservation		.
Template Sequence		.	T	G	G	S	H	G	T	V	E	X	Y	A	N	P	V	L	A	P	L	A	G	D	A	X	G	V	I	F	E	A	A	D	E	P	T	V	Y	L	V	G	D	T	V	W	T	S	D	V	E	K	A	L	L	R	F	D	P	N	V	I	I	X	N	T	G	Y	A	Q	I	L	G	F	E	D	S	I	I	X	G
Template Known Secondary structure		.					S	S						T	S	T	T																T	T	S								S			S														S							S		B		B	T	T		S	S		S	S
Template Predicted Secondary structure		.
Template SS confidence
			125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	D	M	L	R	M	G	E	A	L	N	A	K	V	V	I	P	F	H	H	D	I	W	S	N	F	Q	A	D	P	Q	E	I	R	V	L	W	E	M	K	K	D	R	L	K	Y	G	F	K	P	F	I	W	Q	V	G	G	K	F	T	W
Query Conservation
Alig confidence																																																.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		T	K	D	I	G	R	X	V	V	R	K	P	E	A	K	I	I	A	V	H	X	D	T	V	N	H	T	A	T	S	R	K	D	V	R	K	F	I	K	G	N	N	I	E	S	H	.	.	.	.	V	A	V	P	E	D	G	E	T	I	T	L
Template Known Secondary structure													T	T	S						S		S	S	S	S	S	B														T	T		T	T	T	.	.	.	.						T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions