Job Description P39300 Confidence 99.26% Date Thu Jan 5 11:59:05 GMT 2012 Rank 37 Aligned Residues 181 % Identity 14% Template c3lvzA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum Resolution 1.40 Å

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		40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		M	W	W	L	.	.	.	G	C	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V	L	D	P	F	A	I	R	Q	I	D	A	V	L	A	T
Query Conservation						.	.	.
Alig confidence						.	.	.													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Sequence		I	Y	Y	V	G	T	D	G	I	A	V	Y	V	I	K	T	S	Q	G	.	L	I	L	M	D	T	A	M	P	Q	S	T	G	M	I	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	A	K	L	G	F	K	V	.	.	.	A	D	I	K	L	I	L	N	T
Template Known Secondary structure								S	S	S								T	T		.									G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T			G	.	.	.	G	G							S
Template Predicted Secondary structure																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																							.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100
		117	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160													.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure									.																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	D	H	N	D	H	I	.	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	W	G	V	P	K	E	R	.	.	.	.	.	.	.	.	.	.	.	.	C	I	V	V	K	P	G	D	V	V	K	V	K	D	I	E	I	H	A	L	D	A	F
Query Conservation									.																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.									.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																		.	.	.	.	.																																																									.	.	.
Template Sequence		H	A	H	L	D	H	T	G	G	F	A	E	I	K	K	E	.	.	.	.	.	T	G	A	Q	L	V	A	G	E	R	D	K	P	L	L	E	G	G	Y	Y	P	G	D	E	K	N	E	D	L	A	F	P	A	V	K	V	D	R	A	V	K	E	G	D	R	V	T	L	G	D	T	T	L	T	A	H	.	.	.
Template Known Secondary structure				S					T	T								.	.	.	.	.									G	G	G							T			T	T		T	T		G	G	G								S					T	T						T	T							.	.	.
Template Predicted Secondary structure																		.	.	.	.	.																																																									.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	.	.	.	.	G	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K	H	G	N	E	H	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K
Query Conservation																																				.	.	.	.
Alig confidence		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.									.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	T	P	G	H	S	P	G	C	.	.	.	.	.	.	.	.	.	.	T	S	W	E	M	T	V	K	D	G	K	E	D	R	E	V	L	F	F	C	S	G	T	V	A	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	V	G	Q	P	T	Y	A	G	I	V
Template Known Secondary structure		.	.	.	.	.	.	.				S	S	S	T	T		.	.	.	.	.	.	.	.	.	.										T	T														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S		S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									173	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																.	210	.	.	.	.	.	.	.	.	.	220
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	S	A	D	M	L	R	M	G	E	A	L	N	A	K	V	V	I	P	F	H	H	D	I	W	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	Y	R	A	T	F	A	K	A	K	A	M	K	I	D	V	L	L	G	P	H	P	E	V	Y	G
Template Known Secondary structure														S			S					S	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions