Job Description P39300 Confidence 99.61% Date Thu Jan 5 11:59:05 GMT 2012 Rank 16 Aligned Residues 221 % Identity 17% Template c3bk2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex Resolution 2.10 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V	L	D	P	F	A	I	R	Q	I	D	A	V	L	A	T	H	D	H	N	D	H	I
Query Conservation
Alig confidence											.													.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation											.													.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		G	K	N	I	T	V	F	R	F	.	R	D	E	I	F	V	L	D	G	G	L	A	.	.	.	.	.	.	.	.	.	.	F	P	E	E	G	X	P	G	V	D	L	L	I	P	R	V	D	Y	L	.	.	.	.	.	.	.	.	.	I	E	H	R	H	K	I	K	A	W	V	L	T	H	G	H	E	D	H	I
Template Known Secondary structure		S									.	T	T										B	.	.	.	.	.	.	.	.	.	.				T	T	S	T	T												.	.	.	.	.	.	.	.	.			T	G	G	G
Template Predicted Secondary structure											.													.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.										.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure		.																															.	.	.	.	.	.																						.
Query SS confidence		.																															.	.	.	.	.	.																						.
Query Sequence		.	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	.	.	.	.	.	.	W	G	V	P	K	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	D	.	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q
Query Conservation		.																															.	.	.	.	.	.																						.
Alig confidence		.																															.	.	.	.	.	.																						.														.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		G	G	L	P	F	L	L	P	X	I	F	G	K	E	S	P	V	P	I	Y	G	A	R	L	T	L	G	L	L	R	G	K	L	E	E	F	G	L	R	P	G	A	F	N	L	K	E	I	S	P	D	D	R	I	Q	V	G	R	Y	F	T	L	D	L	F	R	X	T	H	S	I	P	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T											S				S																			T	T			S	T	T	S							T	T						T	T	T											S	S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.												230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	Y	.	.	.	.	.	.	.	.	.	.	.	S	N	Y	Y	A	K	H	G	N	E	H	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	.	.	.	K	M	T
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.											.																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	G	V	V	I	R	T	P	I	G	T	I	V	H	T	G	D	F	K	L	D	P	T	P	I	D	G	K	V	S	H	L	A	K	V	A	Q	A	G	A	E	.	G	V	L	L	L	I	A	D	A	T	N	A	E	R	P	G	Y	T	P	S	E	X	E	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S									T	T								S					S	S		T	T	S															.			S							T	T	T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
														154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		S	A	D	M	L	R	M	G	E	A	L	N	A	K	V	V	I	P	F	H	H	D	I	W	S	N	F	Q	A	D	P	Q	E	I	.	R	V	L	W	E	M	K	K	D	R	L	K	Y	G
Query Conservation																																				.
Alig confidence																					.	.	.	.												.
Template Conservation																					.	.	.	.
Template Sequence		A	K	E	L	D	R	V	I	G	R	A	P	G	R	V	F	V	T	T	.	.	.	.	F	A	S	H	I	H	R	I	Q	S	V	I	W	A	A	E	K	Y	G	R	K	V	A	X	E	G
Template Known Secondary structure													S	S							.	.	.	.		T	T															T	T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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