Job Description P39300 Confidence 99.55% Date Thu Jan 5 11:59:05 GMT 2012 Rank 22 Aligned Residues 210 % Identity 17% Template c3af5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii Resolution 2.60 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																				.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.
Query Sequence		I	E	Q	E	Q	V	A	P	G	T	F	A	M	W	W	L	G	C	.	.	.	.	.	.	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V
Query Conservation																				.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	K	P	E	Y	K	S	R	W	I	R	I	T	G	L	G	G	F	R	E	V	G	R	S	A	L	L	V	Q	T	.	D	E	S	F	V	L	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	V	N	V	A	M	L	N	D	P	Y	K	A	F	P	H	F	D	A	P	E
Template Known Secondary structure		T	S	S	S					S										S	S	S	S	S									.	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	T	T						S			T	T
Template Predicted Secondary structure																																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.																			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		102	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	.	P	F	A	I	R	Q	I	D	A	V	L	A	T	H	D	H	N	D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	W	G	V	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																						.	.																													.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																													.
Template Sequence		F	Q	Y	V	L	R	E	G	L	L	D	A	I	I	I	T	H	A	H	L	D	H	C	G	.	.	M	L	P	Y	L	F	R	Y	N	L	F	D	G	P	I	Y	T	T	P	P	T	R	D	L	M	V	L	L	.	Q	K	D	F	I	E	I	Q	Q	S	N	G	Q	D	P	L	Y	R	P	R	D	I	K	E	V
Template Known Secondary structure								T	T								S		S	S					T	.	.	T							T	T				S																.											T	T				S	S
Template Predicted Secondary structure																										.	.																													.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
			159	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.																.																																									.
Query SS confidence		.																.																																									.
Query Sequence		.	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	.	D	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	.	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K
Query Conservation		.																.																																									.
Alig confidence		.																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	H	T	I	T	L	D	Y	G	E	V	R	D	I	S	P	D	I	R	L	T	L	H	N	A	G	H	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	A	I	V	H	L	H	I	G	N	G	L	H	N	I	A	I	T	G	D	F	K	F	I	P	T	R	L	L
Template Known Secondary structure				T						T	T							T	T									S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T									T	T	T	T	T							S				S			S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.																					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		236	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280
Predicted Secondary structure				.	.	.																																				.	.	.	.	.	.	.
Query SS confidence				.	.	.																																				.	.	.	.	.	.	.
Query Sequence		H	G	.	.	.	N	E	H	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G	E	A	L	.	.	.	.	.	.	.	N	A	K	V	V	I	P	F
Query Conservation				.	.	.																																				.	.	.	.	.	.	.
Alig confidence				.	.	.																					.															.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		E	P	A	N	A	K	F	P	R	L	E	T	L	V	M	E	S	T	Y	G	G	A	N	D	I	.	Q	M	P	R	E	E	A	E	K	R	L	I	E	V	I	H	N	T	I	K	R	G	G	K	V	L	I	P	A
Template Known Secondary structure							B		S	S		S							T	T		S	T	T			.																					T	T
Template Predicted Secondary structure																											.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions