Job Description P39300 Confidence 99.53% Date Thu Jan 5 11:59:05 GMT 2012 Rank 24 Aligned Residues 207 % Identity 18% Template c2ycbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus Resolution 3.10 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																				.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.
Query Sequence		I	E	Q	E	Q	V	A	P	G	T	F	A	M	W	W	L	G	C	.	.	.	.	.	.	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V
Query Conservation																				.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.
Template Conservation																																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.
Template Sequence		H	Q	K	P	K	Y	D	N	D	W	A	R	L	T	A	M	G	G	F	R	E	V	G	R	S	C	L	Y	L	Q	T	.	P	N	S	R	V	L	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	V	.	.	.	.	N	V	A	G	G	D	D	K	N	S	Y	P	Y	L	N
Template Known Secondary structure		T	S			S	S												S	S	S	S	S	S									.	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.			S	S							S			T	T
Template Predicted Secondary structure																																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.																			.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																							.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	P	F	A	I	R	Q	I	D	A	V	L	A	T	H	D	H	N	D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	W	G	V	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		V	P	E	F	T	L	D	S	L	D	A	V	I	I	T	H	A	H	L	D	H	S	G	F	.	.	.	L	P	Y	L	Y	H	Y	G	Y	D	G	P	V	Y	C	T	A	P	T	R	D	L	M	T	L	L	Q	L	D	H	I	D	I	A	H	R	E	D	E	P	L	P	F	N	V	K	H	V	K	K	S	V	K
Template Known Secondary structure		S	T	T			T	T	T							S	S	S	S					T	T	.	.	.							T	T			S																											T				S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		R	C	I	V	V	K	P	G	D	V	V	K	V	K	.	D	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K	H	G	N
Query Conservation																.
Alig confidence																.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	T	I	T	L	D	Y	G	E	V	T	D	I	A	P	D	I	R	L	T	L	H	N	A	G	H	I	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	M	A	H	L	H	I	G	D	G	Q	H	N	M	V	Y	T	G	D	F	K	Y	E	Q	S	R	L	L	E	A	A
Template Known Secondary structure		T						T	T							T	T										S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T	T							S			S	S			S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		239	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280
Predicted Secondary structure					.	.	.																																.	.	.	.	.	.	.
Query SS confidence					.	.	.																																.	.	.	.	.	.	.
Query Sequence		E	H	Q	.	.	.	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G	E	A	L	.	.	.	.	.	.	.	N	A	K	V	V	I	P	F
Query Conservation					.	.	.																																.	.	.	.	.	.	.
Alig confidence					.	.	.														.																		.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		A	N	R	F	P	R	I	E	T	L	V	M	E	S	T	Y	G	G	H	.	E	D	V	Q	P	S	R	N	R	A	E	K	E	L	V	K	T	I	Y	S	T	L	R	R	G	G	K	I	L	I	P	V
Template Known Secondary structure						S			S							T	T		S	G	.	G	G																							T
Template Predicted Secondary structure																					.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions