Job Description P39300 Confidence 99.57% Date Thu Jan 5 11:59:05 GMT 2012 Rank 20 Aligned Residues 206 % Identity 18% Template c2xr1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																				.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.
Query Sequence		I	E	Q	E	Q	V	A	P	G	T	F	A	M	W	W	L	G	C	.	.	.	.	.	.	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V
Query Conservation																				.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	R	E	C	T	S	K	D	Q	W	V	R	V	T	A	L	G	G	C	K	E	V	G	R	S	C	F	L	L	S	T	.	P	E	S	R	I	L	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P
Template Known Secondary structure		T	S					S												S	S	S	S	S									.	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S		S	S					T	T	S	T	T	T		S
Template Predicted Secondary structure																																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.																			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.												.	.	.	.	.	.												.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	P	F	A	I	R	Q	I	D	A	V	L	A	T	H	D	H	N	D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	.	.	.	.	.	.	.	.	.	.	.	G	W	G	V	P	K	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.																		.	.	.																									.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.																		.	.	.
Template Sequence		L	N	.	.	.	.	.	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	.	.	.	V	P	L	L	F	K	Y	G	Y	E	G	P	V	Y	C	T	P	P	T	R	D	L	M	V	L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	I	P	Y	E	S	G	M	V	A	K	T	L	K
Template Known Secondary structure		G	G	.	.	.	.	.	G								S	S						T	T	.	.	.							T	T			S																											T					S		T
Template Predicted Secondary structure				.	.	.	.	.																		.	.	.
Template SS confidence
		232	.						.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		R	C	I	V	V	K	P	G	D	V	V	K	V	K	.	D	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K	H	G	N
Query Conservation																.
Alig confidence																.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P	D	I	K	L	T	F	H	N	A	G	H	I	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	I	S	H	F	H	I	G	D	G	L	H	N	V	V	F	T	G	D	Y	K	Y	E	K	T	R	L	F	D	P	A
Template Known Secondary structure		T						T	T							T	T									S	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T								S				S			S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		239	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280
Predicted Secondary structure				.	.	.																																	.	.	.	.	.	.	.
Query SS confidence				.	.	.																																	.	.	.	.	.	.	.
Query Sequence		E	H	.	.	.	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G	E	A	L	.	.	.	.	.	.	.	N	A	K	V	V	I	P	F
Query Conservation				.	.	.																																	.	.	.	.	.	.	.
Alig confidence				.	.	.															.																		.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		V	N	K	F	P	R	V	E	T	V	I	S	E	A	T	Y	G	N	A	.	N	A	F	Q	P	A	L	K	D	A	E	K	H	L	Q	M	V	V	K	N	T	I	E	R	G	G	I	A	V	I	P	A
Template Known Secondary structure				B		S			S							T	T		S	T	.	T																							T	T
Template Predicted Secondary structure																					.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions