Job Description P39300 Confidence 99.34% Date Thu Jan 5 11:59:05 GMT 2012 Rank 28 Aligned Residues 186 % Identity 18% Template c2q9uB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis Resolution 1.90 Å

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		40	.	.	.	.	.																				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	W	W	L	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	W	V	G	I	V	D	W	M	V	R	I	F	H	G	Y	H	T	D	E	G	S	S	Y	N	S	Y	F	I	D	.	.	D	E	C	P	T	V	I	D	S	V	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	A	E	E
Template Known Secondary structure										S	S					T	T				T	T											.	.	S	S	S									G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.																															60	.	.	.	.
		101	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																																																.
Query SS confidence								.	.	.	.																																																.
Query Sequence		V	L	D	P	F	A	.	.	.	.	I	R	Q	I	D	A	V	L	A	T	H	D	H	N	D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	.	W	G	V	P	K	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	D	I
Query Conservation								.	.	.	.																																																.
Alig confidence								.	.	.	.																				.	.	.																										.
Template Conservation																															.	.	.
Template Sequence		W	L	S	R	I	A	A	C	C	P	L	D	K	I	K	Y	V	V	M	N	H	A	E	G	D	H	A	S	S	.	.	.	L	K	D	H	Y	H	K	F	T	N	A	T	F	V	C	T	K	K	C	Q	E	H	L	K	I	L	Y	G	M	E	K	A	T	W	L	I	V	D	D	K	Y	T	L	K	I	G	K	R
Template Known Secondary structure										S		G	G	G							S								T	T	.	.	.					G	G	G		T	T																				T	T								T	T						S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.																			.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	N	Y	Y	A	K	H	G
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	K	.	.	.	.	.	.	.	.	.	F	I	P	V	P	L	L	H	W	P	D	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	T	Y	C	P	E	D	K	I	L	F	S	N	D	G	F	G	Q	H	Y	A	T	S	R	R	W	A	D	E	C	D	V	S	H	V	M	H	L	F	K	E	Y	T
Template Known Secondary structure					.	.	.	.	.	.	.	.	.					T	T	S	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T						T	T	T							S			B	G	G	G	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.										.	.	.	.	.	150	.	.	.	.	.													.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	H	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G	E	A	L	N	A	K	V	V	I	P	F	H	H	D	I	W	S	N	F	Q	A	D	P	Q	E	I	R	V	L	W	E
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.							.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.							.	.
Template Sequence		A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	L	G	L	F	S	A	Q	M	R	K	A	L	E	V	A	S	T	V	E	I	K	Y	I	L	S	A	H	.	.	.	G	V	S	W	R	G	.	.	D	A	M	G	L	A	I	A
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T													T	T	S			S					S	S	.	.	.	S		B				.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.							.	.
Template SS confidence
		201															.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.			.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions