Job Description P39300 Confidence 99.13% Date Thu Jan 5 11:59:05 GMT 2012 Rank 47 Aligned Residues 200 % Identity 15% Template c2br6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:aiia-like protein; PDBTitle: crystal structure of quorum-quenching n-acyl homoserine2 lactone lactonase Resolution 1.7 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	T	F	A	M	W	W	L	G	C	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V	D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V	L	D	P	F	A	I	R	Q	I	D	A	V	L
Query Conservation
Alig confidence																				.																																.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																				.																																.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Sequence		L	T	P	G	K	L	L	N	L	P	V	W	C	Y	L	L	E	T	.	E	E	G	P	I	L	V	D	T	G	M	P	E	S	A	V	N	N	I	L	P	K	M	T	E	E	D	R	I	V	N	.	.	.	.	.	.	.	.	.	.	.	I	L	K	R	V	G	Y	E	P	D	D	L	.	.	.	L	Y	I	I
Template Known Secondary structure		S		S																.	T	T									S		G	G	G	B	T						B		G	G	G	S				.	.	.	.	.	.	.	.	.	.	.						T			G	G	G		.	.	.	S
Template Predicted Secondary structure																				.																																.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.												.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	H	D	H	N	D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	W	G	V	P	K	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	D	I	E	I	H	A	L	D	A	F	D	R	T	A	L	I	T	L	P	A	D
Query Conservation
Alig confidence												.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template Sequence		S	S	H	L	H	F	D	H	A	G	.	.	.	.	.	.	.	G	N	G	A	F	T	N	T	P	I	I	V	Q	R	T	E	Y	E	A	A	L	H	R	E	E	Y	M	K	E	C	I	L	P	H	L	N	Y	K	I	I	E	G	D	Y	E	V	V	.	.	.	.	.	.	P	G	V	Q	L	L	Y	T	P	G
Template Known Secondary structure			S			S					T	.	.	.	.	.	.	.	T	G	G	G		S	S	S													T	T		T	T			G	G	G	S		T	T	S							S	S					.	.	.	.	.	.	T	T								S
Template Predicted Secondary structure												.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K	H	G	N	E	H	Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G	E	A	L	.	.
Query Conservation																																																																																.	.
Alig confidence							.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation							.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	S	P	G	H	.	.	.	.	.	.	.	.	.	Q	S	L	F	I	K	T	E	Q	S	G	S	V	L	L	T	I	D	A	S	Y	T	K	E	N	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	V	P	F	A	G	F	D	P	E	L	A	L	S	S	I	K	R	L	K	E
Template Known Secondary structure		S	S	T	T		.	.	.	.	.	.	.	.	.								T	T	T								T	T		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.										.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
						273	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.										.	.	.	.
Query SS confidence		.	.	.	.										.	.	.	.
Query Sequence		.	.	.	.	N	A	K	V	V	I	P	F	H	.	.	.	.	H	D	I	W	S	N	F
Query Conservation		.	.	.	.										.	.	.	.
Alig confidence		.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		V	V	K	K	E	K	P	I	I	F	F	G	H	D	I	E	Q	E	K	S	C	R	V	F
Template Known Secondary structure													S	S						T	T	S			T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions