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Job DescriptionP15067
Confidence100.00%DateThu Jan 5 11:34:29 GMT 2012
Rank60Aligned Residues352
% Identity17%Templated2guya2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.59

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.........170... ......180.........190.........200.........210.........
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Query Sequence  WGSTIIYEAHVKGLTYLHPEIPVEIR. . . . . . . . GTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYW
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Template Sequence  WRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGI. . IDKLDYIQGMGFTAIWITPVTAQLPQTT. . . AYGDAYH
Template Known Secondary structure  TT



BTT

SS



GGGT



B
..TTTT








B...TTB

TT
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   6...10.........20.........30.........40..... ....50.........60.........70... ......80
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  GYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNW
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Template Sequence  GYWQQDIYSLNENYGT. . . . . ADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNY
Template Known Secondary structure  S
S
TTS

.....TT


SB

B
GGG

GGGSBS

SGGGB

S
B


T
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   81........90...... ...100.........110.........120.........130.........140.........150.....
 
   300.. .......310.........320.........330.........340.........350.........360.....
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Query Sequence  TGC. . . . . . . . . . . . . . GNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQ
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Template Sequence  EDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKA. . . . . . . . . . . AG
Template Known Secondary structure  T
SB
SS
BB
TTST

TTGGGS
GGG...........T
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   156...160.........170.........180.........190.........200.........210.........220.. ..
 
   366...370.........380.........390.........400.........410.........420.........430.........440.....
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Query Sequence  VKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGF
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Template Sequence  VYCIGEVLDGDPAYTCP. YQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPD. . . . STLLGTFVENHD. .
Template Known Secondary structure  S



S
GG.GGGTSSB
SSTT

SS
....GGGS
S

TT..
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   225....230.........240. ........250.........260.........270.........280..... ....290.......
 
   446...450.........460.........470.........480.........490.........500.........510.........520.....
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Query Sequence  TLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGND
Template Known Secondary structure  .....................................S

GGGT


SSSTTGGGT



ST
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   298.300.........310.........320.........330.........340
 
   526...530.........540. ........550.........560.........570
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Query Sequence  NNAYCQDNQLTWLDWS. . QASSGLTAFTAALIHLRKRIPALVENRWW
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Template Sequence  . . . . . . PANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVT
Template Known Secondary structure  ......TTT


GGGGT

TTS
TTTT
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   341........350.........360.........370.........380.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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