Return to main results Retrieve Phyre Job Id

Job DescriptionP15067
Confidence98.41%DateThu Jan 5 11:34:29 GMT 2012
Rank122Aligned Residues324
% Identity19%Templated1x1na1
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   174.....180.........190.........200.........210.........220.........230.........240...
Predicted Secondary structure 















































..........
Query SS confidence 





































































. . . . . . . . . .
Query Sequence  GTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDE. . . . . . . . . .
Query Conservation 


 
     





 


  
 
 

                 


    
 


  


       
..........
Alig confidence 






.
































......














.....


..........
Template Conservation 



 

.   

     
    




           

......

  
 







 .....
  
 
   
   
Template Sequence  GDLGPQA. FKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSP. . . . . . YSGQDANCGNTLLIS. . . . . LEELVDDGLLKME
Template Known Secondary structure 

SS.T





S
B

SSS
TT
T......TSBS
SSS

GGGS
.....TSS
GG
Template Predicted Secondary structure 



.



















......












.....







Template SS confidence 















































































   44.....50 .........60.........70.........80... ......90........ .100.........110.
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation   
        


  
   
   
  

  
          
  
        

  

 
 

        
  

   
Template Sequence  ELPEPLPTDRVNYSTISEIKDPLITKAAKRLLSSEGELKDQLENFRRDPNISSWLEDAAYFAAIDNSVNTISWYDWPEPL
Template Known Secondary structure  GS





SB

TTT

S


SSGGGS
Template Predicted Secondary structure 




























Template SS confidence 















































































   112.......120.........130.........140.........150.........160.........170.........180.........190.
 
   244.....250.........260.........270.........280.........290.
Predicted Secondary structure  ................................
























Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIR
Query Conservation  ................................

 

  

  

 





 

                         
Alig confidence  ................................


























........












Template Conservation                    
 
   

     
      

   

 
 






  

........




 
 

 
 
Template Sequence  KNRHLAALEEVYQSEKDFIDIFIAQQFLFQRQWKKVRDYARSKGISIMGDMPIYVGYHS. . . . . . . . ADVWANKKQFLLN
Template Known Secondary structure  TT
STT
SS

SSS........T
GGGB
B
Template Predicted Secondary structure 








........




Template SS confidence 















































































   192.......200.........210.........220.........230.........240.........250 .........260...
 
   292.......300...... ...310.... .....320.........330.........340.........350
Predicted Secondary structure 














......



.........














......
Query SS confidence 














. . . . . .







. . . . . . . . .



































. . . . . .
Query Sequence  EDGDYHNWTGCGNTL. . . . . . NLSHPAVV. . . . . . . . . DYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQD. . . . . .
Query Conservation    
      
   

......
  

 

.........  
      

 
 





 
 
  
         ......
Alig confidence 














......







.........












..




















......
Template Conservation          





 

  

 

 
 
 
  
   

 

  


     .. 
 




  

 
 
 

    

  
Template Sequence  RKGFPLIVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWVRRIQRATDL. . FDEFRIDHFRGFAGFWAVPSEEKIAIL
Template Known Secondary structure  TTS
BSB

SSSSS

B



B
B
TTS..
STGGGGTTT
SSSSS
Template Predicted Secondary structure 


























..














Template SS confidence 















































































   264.....270.........280.........290.........300.........310.... .....320.........330.........340.
 
   351........360.........370.........380.........390.........400.........410.........420..
Predicted Secondary structure  ........






























Query SS confidence  . . . . . . . .







































































Query Sequence  . . . . . . . . APLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASS
Query Conservation  ........  
   
          

 
                     
                        
    
Alig confidence  ........








..











................













...















Template Conservation 
  
  
   
   
  ..      





................
 

  
   
   ...

 
  
  
      
Template Sequence  GRWKVGPGKPLFDAILQ. . AVGKINIIAEDL. . . . . . . . . . . . . . . . GVITEDVVQLRKSI. . . EAPGMAVLQFAFGSDA
Template Known Secondary structure 



..





................SS

T...T

GGGSSSS
T
Template Predicted Secondary structure 



..





................




...








Template SS confidence 















































































   342.......350........ .360.........370 .........380.... .....390.........400
 
   423......430.........440.........450.........460.........470.........480.........490.........500..
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  DVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTT
Query Conservation                


  

   
 
                                               
 
   
Alig confidence 
















































.....................









Template Conservation       
  
    
    


  

 


       
      
     .....................      
   
Template Sequence  ENPHLPHNHEQNQVVYTGTHDNDTIRGWWDTLPQEEKSNVLKYLSNIEE. . . . . . . . . . . . . . . . . . . . . EEISRGLIEG
Template Known Secondary structure  T
TTSGGG

SSS

TTS

TS
TTS

G.....................GG
Template Predicted Secondary structure 






















.....................
Template SS confidence 















































































   401........410.........420.........430.........440......... 450.........
 
   503......510....... ..520.........530.........540.........550.........560.
Predicted Secondary structure 



...



























Query SS confidence 














. . .











































Query Sequence  LLLSQGTPMLLAGDE. . . HGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRI
Query Conservation    
 

 
 

 
 
... 
                    
      
    
 

 


  
Alig confidence 














...











































Template Conservation     
 
 
 
  




 
    
 
 


   

  

               
  
    
Template Sequence  AVSSVARIAIIPMQDVLGLGSDSRMNIPATQFGNWSWRIPSSTSFDNLDAEAKKLRDILATY
Template Known Secondary structure  TSS
STT

GGG
S

TT
SSS
S
B


TT

GGG
T
Template Predicted Secondary structure 





























Template SS confidence 





























































   460.........470.........480.........490.........500.........510.........520.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions