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Job DescriptionP15067
Confidence100.00%DateThu Jan 5 11:34:29 GMT 2012
Rank84Aligned Residues368
% Identity12%Templated1r7aa2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.77

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  WGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMF
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Template Sequence  MKNKVQLITYADRLGD. . . . . . . . . . GTIKSM. . TDILRTRFDGVYDGVHILPFFTPFDGAD. . . . . . . . . AGFDPIDHT
Template Known Secondary structure 

SS

SSSBSS..........SS..STTT





SSSSS.........TTSS
S
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   228.230.........240.........250.........260.........270.........280.........290..
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Query Sequence  ALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRE. . . . . . . . . . . . . . .
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Template Sequence  KVDERLGS. . . . . WDDVAELS. . . . . KTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLA
Template Known Secondary structure 
TTT

..........TTS
STTSGGGSTTGGGB
B
TT


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   293......300.........310.........320.........330.........340.........350.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDA.
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Template Sequence  GIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMA. ASHVSYIRLDAVGYGAKEAGTSCFMT
Template Known Secondary structure  TS

SSSS
STT
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TTS.TT

TGGGS


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   130.........140.........150.........160.........170.........180.. .......190.........200........
 
   352.......360.........370.........380.........390.........400.........410.........420.......
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Query Sequence  . . . . PLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKR
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Template Sequence  PKTFKLISRLREEGVKRGLEILIEVHSYYKKQVEIA. . SKVDRVYDFALPPLLLHALSTGHVEPVAHWTDI. . . . . . . . .
Template Known Secondary structure  TT



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Query Sequence  NGRLPSAAINLVTAHDGFTLRDCVCFNHKHN. . . . . . . . . . . . . . . . . EANGEENRDGTNNNYSNNHGKEGLGGSLDLVE
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Template Sequence  . . . RPNNAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSAL
Template Known Secondary structure  ...S
SS
S

SS
B
STTTS

SS
TTS

SS
TTTSGGGSB
S
SSSB
S
T
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   278.280.........290.........300.........310.........320.........330.........340.........350....
 
   491........500.........510.........520...... ...530.........540. ........550.........560.
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Query Sequence  RRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNN. . . NAYCQDNQLTWLDWS. . . . QASSGLTAFTAALIHLRKRI
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Template Sequence  GNDQHYIAARAVQFFLPGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRNEL
Template Known Secondary structure 

SSSTT




BGGGGG


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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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