Job Description P15067 Confidence 100.00% Date Thu Jan 5 11:34:29 GMT 2012 Rank 94 Aligned Residues 328 % Identity 16% Template d1jaea2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.65

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		175	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		T	Y	K	A	L	G	H	P	V	M	I	.	N	Y	L	K	Q	L	G	I	T	A	L	E	L	L	P	V	A	Q	F	A	S	E	P	R	L	Q	R	M	G	L	S	N	Y	W	G	Y	N	P	V	A	M	F	A	L	H	P	A	Y	A	C	S	P	E	T	A	L	D	E	F	R	D	A	I	K	A	L	H	K
Query Conservation													.
Alig confidence							.	.					.																									.	.	.	.	.												.										.	.	.	.	.
Template Conservation							.	.																														.	.	.	.	.												.										.	.	.	.	.
Template Sequence		K	W	N	D	I	.	.	A	D	E	C	E	R	F	L	Q	P	Q	G	F	G	G	V	Q	I	S	P	P	N	E	Y	L	V	A	D	G	.	.	.	.	.	R	P	W	W	E	R	Y	Q	P	V	S	.	Y	I	I	N	T	R	S	G	D	.	.	.	.	.	E	S	A	F	T	D	M	T	R	R	C	N	D
Template Known Secondary structure							.	.							T	T	T	T	T	T										S		B	B			T	T	.	.	.	.	.			G	G	G	G	G	S	B			.	S		S			T	T			.	.	.	.	.
Template Predicted Secondary structure							.	.																														.	.	.	.	.												.										.	.	.	.	.
Template SS confidence
		20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.								.	290	.	.	.	.	.	.	.	.	.	300											.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	I	E	V	I	L	D	I	V	L	N	H	S	A	E	L	D	L	D	G	P	L	F	S	L	R	G	I	D	N	R	S	Y	Y	.	.	.	.	.	.	.	W	I	R	E	D	G	D	Y	H	N	W	T	.	.	.	.	.	.	.	.	.	.	G	C	G	N	T	L	N	L	S	H	P	A	V	V	D	Y
Query Conservation																																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	V	R	I	Y	V	D	A	V	I	N	H	M	T	G	M	N	G	V	G	T	S	G	S	S	A	D	H	D	G	M	N	Y	P	A	V	P	Y	G	S	G	D	F	H	S	P	C	E	V	N	N	Y	Q	D	A	D	N	V	R	N	C	E	L	V	G	L	R	D	L	N	Q	G	S	D	Y	V	R	G	V
Template Known Secondary structure		T	T										S	B			S	S				B	T	T	S				B	T	T	T	T	B	B	T	T	T	T	B		G	G	G	B					B				T	T								S	B	B	T	T	B		B	B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		A	S	A	C	L	R	Y	W	V	E	T	C	H	V	D	G	F	R	F	D	L	A	A	V	M	G	R	T	P	E	F	R	Q	D	A	P	L	F	T	A	I	Q	N	.	.	C	P	V	L	S	Q	V	K	L	I	A	E	P	W	D	I	A	P	G	G	Y	Q	V	G	N	F	P	P	L	F	A	E	W	N	D
Query Conservation																																													.	.
Alig confidence											.																																		.	.
Template Conservation											.
Template Sequence		L	I	D	Y	M	N	H	M	I	.	D	L	G	V	A	G	F	R	V	D	A	A	K	H	M	S	P	G	D	L	S	V	I	F	S	G	L	K	N	L	N	T	D	Y	G	F	A	D	G	A	R	P	F	I	Y	Q	E	V	I	D	L	G	G	E	A	I	S	K	N	E	Y	T	G	F	G	C	V	L	E	F
Template Known Secondary structure											.		T	T							T	T	G	G	G	S											T						G	G	G	T			T	T													S	S	S	S			G	G	G	T	T	T	S	S
Template Predicted Secondary structure											.
Template SS confidence
		167	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	R	D	A	A	R	R	F	W	L	H	Y	D	L	P	L	G	A	F	A	G	R	F	A	A	S	S	D	V	F	K	R	N	G	R	L	P	S	A	A	I	N	L	V	T	A	H	D	G	F	T	L	R	D	C	V	C	F	N	H	K	H	N	E	A	N	G	E	E	N	R	D	G	T	N	N	N	Y	S
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	G	V	S	L	G	N	A	F	Q	G	G	N	Q	.	.	.	.	.	.	.	L	K	N	L	A	N	W	G	P	E	W	G	L	L	E	G	L	D	A	V	V	F	V	D	N	H	D	N	Q	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	T	S		.	.	.	.	.	.	.	G	G	G	G	G	G		S	G	G	G	T				G	G	G					S			T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.									.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																																			.																		.	.	.	.	.	.	.	.
Query SS confidence																																			.																		.	.	.	.	.	.	.	.
Query Sequence		N	N	H	G	K	E	G	L	G	G	S	L	D	L	V	E	R	R	R	D	S	I	H	A	L	L	T	T	L	L	L	S	Q	.	G	T	P	M	L	L	A	G	D	E	H	G	H	S	Q	H	G	.	.	.	.	.	.	.	.	N	N	N	A	Y	C	Q	D	N	Q	L	T	W	L	D	W	S	Q	A	S	S
Query Conservation																																			.																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																										.																		.	.	.	.	.	.	.	.																					.
Template Conservation		.	.	.	.	.	.	.	.																																																																								.
Template Sequence		.	.	.	.	.	.	.	.	G	G	S	Q	I	L	T	Y	K	N	P	K	P	Y	K	M	A	I	A	F	M	L	A	H	P	Y	G	T	T	R	I	M	S	S	F	D	F	T	D	N	D	Q	G	P	P	Q	D	G	S	G	N	L	I	S	P	G	I	N	D	D	N	T	C	S	N	G	Y	V	C	E	H	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	S		T	T				T	T	S														S		S	S								B			S	S	T	T					B		T	T	S		B							T	T	S				T	T	B			G	G	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																								.
Template SS confidence
										292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	A	F	T	A	A	L	I	H	L	R	K	R
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	R	W	R	Q	V	Y	G	M	V	G	F	R	N	A
Template Known Secondary structure		.	G	S
Template Predicted Secondary structure		.
Template SS confidence
			363	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions