Return to main results Retrieve Phyre Job Id

Job DescriptionP15067
Confidence100.00%DateThu Jan 5 11:34:29 GMT 2012
Rank57Aligned Residues359
% Identity21%Templated1cxla4
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.81

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   143......150.........160.........170... ......180...... ...190.........200.....
Predicted Secondary structure 





















..............

..










.
Query SS confidence 






























. . . . . . . . . . . . . .












. .


















.
Query Sequence  PPRTPWGSTIIYEAHVKGLTYLHPEIPVEIR. . . . . . . . . . . . . . GTYKALGHPVMIN. . YLKQLGITALELLPVAQFA.
Query Conservation           



 

  

           ..............


 
     


..


 


  
 
 

    .
Alig confidence 






























..............





..




..


















.
Template Conservation           


 
    
                         


  

..  


  

  


  
 
 

     
Template Sequence  SNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGI. . INKINDGYLTGMGVTAIWISQPVENIY
Template Known Secondary structure  T
TT

TT




S
GGG


GGGB
TT

STTSB



..TTTTGGGT






Template Predicted Secondary structure 




































..













Template SS confidence 















































































   7..10.........20.........30.........40.........50....... ..60.........70.........80....
 
   206...210.........220.........230.........240.........250.........260.........270.........280.....
Predicted Secondary structure 
























































Query SS confidence 















































































Query Sequence  SEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNR
Query Conservation               


    
 


  


       


 

  

  

 





 

                   
Alig confidence 





























.....












































Template Conservation                

   
   

   

.....  


 

  

  

 



 
 

 
                 
Template Sequence  SIINYSGVNNTAYHGYWARDFKKTNPAYGT. . . . . IADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYD
Template Known Secondary structure 

TT
STTS
S
TTT

.....TT

TT

TT
TTSTTTT
Template Predicted Secondary structure 





























.....






















Template SS confidence 















































































   85....90.........100.........110.... .....120.........130.........140.........150.........
 
   286...290........ .300.........310.........320.........330.........340.....
Predicted Secondary structure 









....................






















Query SS confidence 












. . . . . . . . . . . . . . . . . . . .














































Query Sequence  SYYWIREDGDYHN. . . . . . . . . . . . . . . . . . . . WTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTP
Query Conservation          
    ....................  
   


  

 

  
      

 
 





 
 
  
    
Alig confidence 












....................


























.


















Template Conservation                                         


  

 
   
      
 .
 





 
 
       
Template Sequence  NGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL. DLGIDGIRMDAVKHMPFGW
Template Known Secondary structure  TT
STT
TT

B

S
B

SSSSBSTTB
TTS.TT

TTGGGS
Template Predicted Secondary structure 












































.








Template SS confidence 















































































   160.........170.........180.........190.........200.........210......... 220.........230........
 
   346...350.........360.........370.........380..... ....390.........400.........410.........420..
Predicted Secondary structure 























...










Query SS confidence 







































. . .




































Query Sequence  EFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNF. . . PPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASS
Query Conservation         
   
          

 
              ...       
                        
    
Alig confidence 









.......






















...




































Template Conservation            .......        
                                                      
Template Sequence  QKSFMAAVNN. . . . . . . YKPVFTFGQWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSA
Template Known Secondary structure  T.......TS






TT


SSSB
TS
SS
Template Predicted Secondary structure  .......
























Template SS confidence 















































































   239240........ .250.........260.........270.........280.........290.........300.........310.
 
   423......430.........440.........450.........460.........470.........480.........490.........500..
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  DVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTT
Query Conservation                


  

   
 
                                               
 
   
Alig confidence 




....











.......................................



















Template Conservation       ....         


.......................................  
             
   
Template Sequence  ADYAQ. . . . VDDQVTFIDNHD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MERFHASNANRRKLEQALAF
Template Known Secondary structure 
TT....GGG

S

TT.......................................S

SS
TTS
Template Predicted Secondary structure 


....




.......................................





Template SS confidence 















































































   312.... ...320........ .330.........340........
 
   503......510.........520.........530.........540.........550.........560.....
Predicted Secondary structure 































Query SS confidence 






























































Query Sequence  LLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALV
Query Conservation    
 

 
 

 
 
 
                    
      
    
 

 


  


 
Alig confidence 






















......

































Template Conservation   

 

 
 

 


 
  
  
......   
    
      
      
  

   


 
Template Sequence  TLTSRGVPAIYYGTEQYMSGGTD. . . . . . PDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIA
Template Known Secondary structure  SSSTTGGGT



ST......TTT







S
STT
Template Predicted Secondary structure 












......


















Template SS confidence 






























































   349350.........360.........370. ........380.........390.........400.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions