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Job DescriptionP15067
Confidence100.00%DateThu Jan 5 11:34:29 GMT 2012
Rank1Aligned Residues654
% Identity100%Templatec2wskA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glycogen debranching enzyme; PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  LAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQEHRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEG
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Template Conservation         



      
 
  


 
  
 
             
     
 
         
  
 
 
         
Template Sequence  LAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQEHRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEG
Template Known Secondary structure 
B


S
SSS
SS
SS
S
TT



TTT

TT




GGGT
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  HRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTY
Query Conservation            



                                        
             



 

  

 
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Template Conservation            



                                        
             



 

  
  
Template Sequence  HRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTY
Template Known Secondary structure 



TTS
B

TT
S
S




GGGB

SSS





GGGS








TT






GGG


T
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  LHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDE
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Template Conservation            
 
 
     





 


  
 
 

 
               


    
 


  


       
Template Sequence  LHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDE
Template Known Secondary structure  T
TTS
GGGTTSTST

S




TTT


SS



GGG
SSGGG
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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  FRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRY
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Template Conservation 

 

  

  

 





 

                                      


  

 
   
 
    
Template Sequence  FRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRY
Template Known Secondary structure  TT


S

TT
STTSB

SB
B
TTSSB

SSSSS

B
TTS
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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
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Query Sequence  WVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRF
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Template Conservation 

   





 


  
                          



                                
Template Sequence  WVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRF
Template Known Secondary structure  TT


TTTBSSSB
TT

TTGGGS

B
SSTT
B
TT
S
TT
Template Predicted Secondary structure 








































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   324.....330.........340.........350.........360.........370.........380.........390.........400...
 
   404.....410.........420.........430.........440.........450.........460.........470.........480...
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Query Sequence  WLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLG
Query Conservation                
                  


  

   
 
                                  
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Template Conservation                
                  

   

     
                                  
Template Sequence  WLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLG
Template Known Secondary structure  TS
S
BTTSSTT

GGG
S

SSS

TT
SS


GGGSSTT
SS
S





TTSSSS
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   404.....410.........420.........430.........440.........450.........460.........470.........480...
 
   484.....490.........500.........510.........520.........530.........540.........550.........560...
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Query Sequence  GSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPA
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Template Conservation                 
 
  

 

 
 

 
 
 
                    
             

 


  

Template Sequence  GSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPA
Template Known Secondary structure 

SBSTTTTTT


TT
S

TT

STTTS

GGG

TT
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   484.....490.........500.........510.........520.........530.........540.........550.........560...
 
   564.....570.........580.........590.........600.........610.........620.........630.........640...
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Query Sequence  LVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPAGEWHAIPPFAGEDNPVITA
Query Conservation 
  
         
                              

  
 
     
 

 
 
  
 
           
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Template Conservation 
  
         
                              


 
 
     
 

 
                  
Template Sequence  LVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPAGEWHAIPPFAGEDNPVITA
Template Known Secondary structure  S




TTSSS
TTSSB

S
STTT
SSS


SS


TTSS
TT




S
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   564.....570.........580.........590.........600.........610.........620.........630.........640...
 
   644.....650.......
Predicted Secondary structure 




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Query Sequence  VWQGPAHGLCVFQR
Query Conservation      

    

  
Alig confidence 













Template Conservation 
   

    
  
Template Sequence  VWQGPAHGLCVFQR
Template Known Secondary structure 
TT
Template Predicted Secondary structure 



Template SS confidence 













   644.....650.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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