Job Description P15067 Confidence 100.00% Date Thu Jan 5 11:34:29 GMT 2012 Rank 2 Aligned Residues 638 % Identity 43% Template c2vncB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:glycogen operon protein glgx; PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus Resolution 3.0 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																				.	.																					.	.	.
Query SS confidence																				.	.																					.	.	.
Query Sequence		T	Q	L	A	I	G	K	P	A	P	L	G	A	H	Y	D	G	Q	.	.	G	V	N	F	T	L	F	S	A	H	A	E	R	V	E	L	C	V	F	D	.	.	.	A	N	G	Q	E	H	R	Y	D	L	P	G	H	S	G	D	I	W	H	G	Y	L	P	D	A	R	P	G	L	R	Y	G	Y	R	V	H	G
Query Conservation																				.	.																					.	.	.
Alig confidence																				.	.																					.	.	.
Template Conservation
Template Sequence		R	P	L	R	P	G	D	P	Y	P	L	G	S	N	W	I	E	D	D	D	G	V	N	F	S	L	F	S	E	N	A	E	K	V	E	L	L	L	Y	S	L	T	N	Q	K	Y	P	K	E	I	I	E	V	K	N	K	T	G	D	I	W	H	V	F	V	P	G	L	R	P	G	Q	L	Y	A	Y	R	V	Y	G
Template Known Secondary structure		S			B				S		S	S						T	T	T	T									T	T		S									S	S			S	S		S										T	T								T			T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.																													.	.	.
Query SS confidence																																												.	.	.	.	.	.	.																													.	.	.
Query Sequence		P	W	Q	P	A	E	G	H	R	F	N	P	A	K	L	L	I	D	P	C	A	R	Q	I	D	G	E	F	K	D	N	P	L	L	H	A	G	H	N	E	P	D	.	.	.	.	.	.	.	Y	R	D	N	A	A	I	A	P	K	C	V	V	V	V	D	H	Y	D	W	E	D	D	A	P	P	R	T	.	.	.
Query Conservation																																												.	.	.	.	.	.	.																													.	.	.
Alig confidence																																												.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		P	Y	K	P	E	L	G	L	R	F	N	P	N	K	V	L	I	D	P	Y	A	K	A	I	N	G	S	V	I	W	N	D	A	V	F	G	Y	K	I	G	D	Q	N	Q	D	L	T	Y	D	E	R	D	S	G	E	Y	V	P	K	S	V	V	I	N	P	Y	F	E	W	D	D	E	D	F	I	K	G	K	K	V
Template Known Secondary structure					G	G	G	T					T	T	S		B			T	T		S		B		S						T	T	S	B	S	S		S	S	S	T	T	T	T	T	S							T	T	T	S														T					S	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	W	G	S	T	I	I	Y	E	A	H	V	K	G	L	T	Y	L	H	P	E	I	P	V	E	I	R	G	T	Y	K	A	L	G	H	P	V	M	I	N	Y	L	K	Q	L	G	I	T	A	L	E	L	L	P	V	A	Q	F	A	S	E	P	R	L	Q	R	M	G	L	S	N	Y	W	G	Y	N	P	V	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	K	D	T	V	I	Y	E	V	H	V	K	G	F	T	K	L	R	L	D	L	P	E	N	I	R	G	T	Y	E	G	L	A	S	E	Q	M	I	S	Y	L	K	D	L	G	I	T	T	V	E	L	M	P	V	F	H	F	I	D	Q	R	F	L	T	D	K	G	L	T	N	Y	W	G	Y	D	P	I	N	F
Template Known Secondary structure			T	T	T													S	S			S	S		T	T	T	T	T	S					T	S	S										T										B		B								T	T	S					S				B	S		S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.
Predicted Secondary structure											.	.																																																													.	.
Query SS confidence											.	.																																																													.	.
Query Sequence		F	A	L	H	P	A	Y	A	C	.	.	S	P	E	T	A	L	D	E	F	R	D	A	I	K	A	L	H	K	A	G	I	E	V	I	L	D	I	V	L	N	H	S	A	E	L	D	L	D	G	P	L	F	S	L	R	G	I	D	N	R	S	Y	Y	W	I	R	E	D	G	D	.	.	Y	H	N	W	T	G	C
Query Conservation											.	.																																																													.	.
Alig confidence											.	.																																																													.	.
Template Conservation
Template Sequence		F	S	P	E	C	R	Y	S	S	T	G	C	L	G	G	Q	V	L	S	F	K	K	M	V	N	E	L	H	N	A	G	I	E	V	I	I	D	V	V	Y	N	H	T	A	E	G	N	H	L	G	P	T	L	S	F	R	G	I	D	N	T	A	Y	Y	M	L	Q	P	D	N	K	R	Y	Y	L	D	F	T	G	T
Template Known Secondary structure		S	S	B		G	G	G		T	T		S	S	S																	T										S			T	T		S	S	S		B		S	S						S	T	T	T	B				T	T								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		G	N	T	L	N	L	S	H	P	A	V	V	D	Y	A	S	A	C	L	R	Y	W	V	E	T	C	H	V	D	G	F	R	F	D	L	A	A	V	M	G	R	T	P	E	.	F	R	Q	D	A	P	L	F	T	A	I	Q	N	C	P	V	L	S	Q	V	K	L	I	A	E	P	W	D	I	A	P	G	G	Y	Q
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		G	N	T	L	N	L	S	H	P	R	V	I	Q	M	V	L	D	S	L	R	Y	W	V	T	E	M	H	V	D	G	F	R	F	D	L	A	A	A	L	A	R	E	L	Y	S	V	N	M	L	N	T	F	F	I	A	L	Q	Q	D	P	I	L	S	Q	V	K	L	I	A	E	P	W	D	V	G	Q	G	G	Y	Q
Template Known Secondary structure		S			B		T	T	S																	T	T								T	T										T	T	T												S	T	T	T	T	T	S										S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	N	F	P	P	L	F	A	E	W	N	D	H	F	R	D	A	A	R	R	F	W	L	H	Y	D	L	P	L	G	A	F	A	G	R	F	A	A	S	S	D	V	F	K	R	N	G	R	L	P	S	A	A	I	N	L	V	T	A	H	D	G	F	T	L	R	D	C	V	C	F	N	H	K	H	N	E	A	N
Query Conservation
Alig confidence																																											.	.	.																														.	.
Template Conservation																																											.	.	.																														.	.
Template Sequence		V	G	N	F	P	Y	Q	W	A	E	W	N	G	K	Y	R	D	S	I	R	R	F	W	R	G	E	A	L	P	Y	S	E	I	A	N	R	L	L	G	S	P	.	.	.	D	I	N	N	K	T	P	F	A	S	I	N	Y	V	T	S	H	D	G	F	T	L	E	D	L	V	S	Y	N	.	.	H	N	E	A	N
Template Known Secondary structure			S				T	T						T	T									T	T		S				T	T								T		T	.	.	.	T					S	G	G	G					S			T	T	S		S	S	S	S	S	S	S			.	.			S	S	S
Template Predicted Secondary structure																																											.	.	.																														.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450				.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	E	N	R	D	G	T	N	N	N	Y	S	N	N	H	G	K	E	G	L	G	G	S	L	D	L	V	E	R	R	R	D	S	I	H	A	L	L	T	T	L	L	L	S	Q	G	T	P	M	L	L	A	G	D	E	H	G	H	S	Q	H	G	N	N	N	A	Y	C	Q	D	N	Q	L	T	W	L	D	W	S
Query Conservation
Alig confidence																						.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		G	F	N	N	Q	D	G	M	N	E	N	Y	S	W	N	C	G	D	Q	N	.	.	.	.	.	.	V	V	I	C	R	E	K	Q	K	R	N	F	M	I	T	L	L	V	S	Q	G	T	P	M	I	L	G	G	D	E	L	S	R	T	Q	R	G	N	N	N	A	F	C	Q	D	N	E	I	T	W	F	D	W	N
Template Known Secondary structure		T	T	T	T			S		S											T	.	.	.	.	.	.	T	S	T	T					S	S							T	T	S	S	S						T	T	T	T	T	T				T	T		S			T	T			S	T	T	T	S				S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.							510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
				542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.		.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																													.
Query SS confidence		.	.																																																													.
Query Sequence		.	.	Q	A	S	S	G	L	T	A	F	T	A	A	L	I	H	L	R	K	R	I	P	A	L	V	E	N	R	W	W	E	E	G	D	G	N	V	R	W	L	N	R	Y	A	Q	P	L	S	T	D	E	W	Q	N	G	P	K	Q	L	Q	I	.	L	L	S	D	R	F	L	I	A	I	N	A	T	L	E	V	T
Query Conservation		.	.																																																													.
Alig confidence		.	.																												.	.	.	.	.	.	.																											.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		L	D	E	R	K	S	K	F	L	E	F	V	K	K	M	I	Q	F	Y	R	A	H	P	A	F	R	R	E	R	.	.	.	.	.	.	.	D	V	T	F	Y	T	L	E	G	R	E	V	D	E	K	T	W	S	S	P	T	Q	L	V	I	F	V	L	E	G	D	S	F	L	I	I	L	N	A	N	P	N	N	V
Template Known Secondary structure				S	T	T	T	T	T												T	T		G	G	G	S	S			.	.	.	.	.	.	.							T	T	T					S	S	T	T	S			S																				S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.								.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.			.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		E	I	V	L	P	A	G	E	W	H	A	I	P	P	F	A	.	.	G	E	D	N	P	V	I	T	A	V	W	Q	G	P	A	H	G	L	C	V	F	Q	R
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		K	V	K	F	P	K	G	K	W	E	L	V	I	S	S	Y	L	R	E	I	K	P	E	E	G	E	K	E	L	E	I	E	G	R	T	A	L	V	Y	R	R
Template Known Secondary structure				B			S	S			B							S	S				S						B					S	S
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.