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Job DescriptionP15067
Confidence98.80%DateThu Jan 5 11:34:29 GMT 2012
Rank115Aligned Residues345
% Identity15%Templatec2qmjA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:maltase-glucoamylase, intestinal; PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   181........190... ......200.........210.........220.........230.........240.........250........
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Query Sequence  HPVMINYLKQLGI. . TALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEV
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Template Sequence  MREVVERNRAAQLPYDVQHADIDY. . . . . . . . . . . . . . . . . . MDERRDFTYDSVDF. . . . . . . KGFPEFVNELHNNGQKL
Template Known Secondary structure  TT




GGG..................SBTTBTT


TTTT.......TTTT
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   307..310.........320.........330 .........340.... .....350.........360.
 
   259260.........270.........280.........290...... ...300.........310.........320.........330....
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Query Sequence  ILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDY. . . . HNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
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Template Sequence  VIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQVEFDGIW
Template Known Secondary structure 
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SSS

T
B
B
TTSSSB

TT
B
TTSTTS

S
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   362.......370.........380.........390.........400.........410.........420.........430.........440.
 
   335.... 340.........350.........360......
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Query Sequence  FDLAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VMGRTPEFRQDAPLFTAIQNCPVLSQV
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Template Sequence  IDMNEVSNFVDGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRS
Template Known Secondary structure 
STTT

SSSBSTT



STTTS
S


S
GGG
TTTTSB
TT
TTGGGSTTB

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   442.......450.........460.........470.........480.........490.........500.........510.........520.
 
   367..370.........380.........390.........400.........410.........420.........430.........440......
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Query Sequence  KLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFT
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Template Sequence  FILTRSTFAGSGKFAAHWLGDNTATWDDL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS

TTGGGT


S
BSS...................................................
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   522.......530.........540.........550
 
   447..450.........460.........470.........480.........490.........500.........510.........
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Query Sequence  LRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHG. . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RWSIPGVLEFNLFGIP. . MVGPDICGFALDTP
Template Known Secondary structure  ................................................TT

..S
T
SBS


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   551........560...... ...570.........580
 
   520.........530.........540.........550.........560.........570.........580.. .
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Query Sequence  . . . . . . . . . . . . HSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNR. . . . Y
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Template Sequence  EELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFG. ADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEF
Template Known Secondary structure  TTSSS


SSS


SGGGG
.TT
TT


S

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   581........590.........600.........610.... .....620.........630.........640.........650.........
 
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Query Sequence  AQPLSTDEWQNGPKQLQILLSDRFLIA. . INATLEVTEIVLPAGEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR
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Template Sequence  YEDNSTWDVHQ. . . . . QFLWGPGLLITPVLDEGAEKVMAYVPDAVWYDYETGSQVRWRKQKVEMELPGDKIGLHLR
Template Known Secondary structure  TT
GGGTT

S.....
TTT


STT
S
SS
TTT

B
S

S

TT

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   660.........670 .........680.........690.........700.........710.........720.........730
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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