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Job DescriptionP15067
Confidence100.00%DateThu Jan 5 11:34:29 GMT 2012
Rank38Aligned Residues436
% Identity18%Templatec1uokA_
PDB info PDB header:glucosidaseChain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  WGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMF
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Template Sequence  WKESVVYQIYPRSFMDSNGDGI. . . . GDLRGI. . ISKLDYLKELGIDVIWLSPVYESPNDD. . . . . . . . . . NGYDISDYC
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GGGT

SSSSSS....

..TTT







TT..........TTSS
S
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   6...10.........20....... ..30... ......40.........50.........60 .........
 
   228.230.........240.........250.........260.........270...... ...280.........290.....
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Query Sequence  ALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL. . FSLRGIDNRSYYWIREDGD. . . . . . . . . .
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Template Sequence  KIMNEFGT. . . . . MEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAF
Template Known Secondary structure 
GGG

.....TT


SB

TTSTT
TT
TTGGGB


SSSS
SS
BB
TT
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   70....... ..80.........90.........100.........110.........120.........130.........140....
 
   296...300.........310.........320.........330.........340.........
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Query Sequence  . . . . . . . . . . . . . . . YHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQ. . . . . . . . . . .
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Template Sequence  SGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL. EKGIDGFRMDVINFISKEEGLPTVETEEEGYVSG
Template Known Secondary structure  SSBSTTTT
SS
TTS
BB
TTS.TT

TTGGGS


TT







SS
B

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   145....150.........160.........170.........180......... 190.........200.........210.........220...
 
   350......... 360.........370......... 380.........390.........400.........410......
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Query Sequence  . . . . . . . . . DAPLFTAIQN. CPVLSQVKLIAEPWDIAPGG. . . YQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAG
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Template Conservation                                 
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Template Sequence  HKHFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCS. LL
Template Known Secondary structure  GGGTTT
TTTGGGS


TT


GGG
S
S


GGGSTTTT



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   224.....230.........240.........250.........260.........270.........280.........290.........300 ..
 
   417..420.........430.........440.........450.........460.........470.........480.........490......
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Query Sequence  RFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSI
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Template Sequence  TLKENLTKWQKALEHTGWNSLYWNNHDQPRVVSRF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GNDGMYRIESA
Template Known Secondary structure  TSSSS


S

TTS

T..................................S
SSTT
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   303......310.........320.........330....... ..340........
 
   497..500.........510.........520.........530... ......540....
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Query Sequence  HALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QLTWLDWSQAS
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Template Conservation            

 
 
  
 
 
                                               
  
 
    
Template Sequence  KMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWDDQN
Template Known Secondary structure  TSSSTTGGGT





SSGGG


TS



GGGGTS




SST
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   349350.........360.........370.........380.........390.........400.........410.........420........
 
   545. ...550.........560.........570.........580.........590.....
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Query Sequence  SG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNG
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Template Sequence  HAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLILENN. . . . . . . . . . . . . . . . PSI
Template Known Secondary structure  TTTS
SS

SS


GGGGTSS
TTS

STT
................SS
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   429430.........440.........450.........460.........470.........480......... 490..
 
   596...600.........610.........620... ......630.........640.........650......
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Query Sequence  PKQLQILLSDRFLIAINATLEVTEIVLP. . . AGEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQ
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Template Conservation 

  
       


 
         
           
             
 
 
    

 
Template Sequence  FAYVRTYGVEKLLVIANFTAEECIFELPEDISYSEVELLIHNYDVENGPIENITLRPYEAMVFK
Template Known Secondary structure  TT
SSS


TT


S
SS






S
TT
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   493......500.........510.........520.........530.........540.........550......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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