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Job DescriptionP15067
Confidence100.00%DateThu Jan 5 11:34:29 GMT 2012
Rank82Aligned Residues362
% Identity17%Templatec1gcyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase; PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  EIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKA
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Template Sequence  APNDWYNIL. . RQQAATIAADGFSAIWMPVPWRDFSSWS. . . . KSGGGEGYFWHDF. NKNGRYGS. . . . . DAQLRQAASA
Template Known Secondary structure  STTT..TT
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S




B
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SSTT
SSS.
S
SSS

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   31........ 40.........50.........60....... ..70.........80 ........ .90........
 
   251........260.........270.........280.........290.. .......300.........310.........320....
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Query Sequence  LHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRE. . . . . . DGDYHNWTGCGNTLNLSHPAVVDYASACLRYW
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Template Sequence  LGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNL
Template Known Secondary structure  TT


SB

TT
SS
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SSSS
BGGGS


SSS
BTTBSS

STTSTTBB
TTS
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   325....330.........340.........350.........360.........370.........380...... ...390
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Query Sequence  VETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFP. . . . . . . . . . . . . . PLFA
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Template Sequence  RSQYGAGGFRFDFVRGYAPERVNSWMTDS. . . . . . . . . ADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCP
Template Known Secondary structure  S
S
GGGS
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TTS




GGGS
TTSGGGGS
TS
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   182.......190.........200.........210 .........220.........230.........240.........250..
 
   391........400.........410.........420.........430.........440.........450.........460.........470
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Query Sequence  EWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTN
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Template Sequence  VFDFALKERMQNGSIADWK. . . . . . . . . . . HGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQ. . . . . . . . . .
Template Known Secondary structure 
S
GGGGG...........GSGGG
SSTT
S

TTTSB
SSGGGB

SS


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   253......260.........270. ........280.........290.........300.........310.
 
   471........480.........490.........500.........510.........520.........530.........540.........550
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Query Sequence  NNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . DGLIRQAYAYILTSPGTPVVYWDHMYDWG. . . . . . . . . . . . . . . . . . . . . . . . . YGDF
Template Known Secondary structure  ......................GGGSSSTSS.........................
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   312.......320.........330.........340 ....
 
   551........560.........570.........580.........590.........600.........610.........620.........630
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Query Sequence  TAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPAGEWHAI
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Template Sequence  IRQLIQVRRAAGVRADSAISFHSGYSGLVATVSGS. . . . . . . . . . . . . . . . . . . QQTLVVALNSDLGNPGQVASGSFSEA
Template Known Secondary structure  T

TT

TTSSS
S...................S
S




GGGT

S

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   345....350.........360.........370......... 380.........390.........400.....
 
   631........640
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Query Sequence  PPFAGEDNPV
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Template Sequence  VNASNGQVRV
Template Known Secondary structure  TTTT
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   406...410.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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