Job Description P76481 Confidence 99.50% Date Thu Jan 5 12:23:23 GMT 2012 Rank 38 Aligned Residues 238 % Identity 16% Template c3v4pB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-7; PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1 Resolution 3.15 Å

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		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																												.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	.	.	.	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		F	L	R	A	E	G	Y	P	V	D	L	Y	Y	L	M	D	L	S	Y	S	M	K	D	D	.	.	L	E	R	V	R	Q	L	G	H	A	L	L	V	R	L	Q	E	V	T	H	S	V	R	I	G	F	G	S	F	V	D	K	T	V	L	P	F	V	S	T	V	P	S	K	L	R	H	P	C	P	T	R	L	E
Template Known Secondary structure						S	S												S	G	G	G				.	.					T	T										T	T	T		S													S	S	T	T	T	S											S	S		T	T	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
										263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																											.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																											.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	R	I	A	L	P	S	I	S	G	S	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	.	.	.	.	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																											.	.	.	.																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.									.	.																																	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		R	C	Q	S	P	F	S	F	H	H	V	L	S	L	T	G	.	.	D	A	Q	A	F	E	R	E	V	G	R	Q	S	V	S	G	N	L	D	S	P	E	G	G	F	D	A	I	L	Q	A	A	L	C	Q	E	Q	I	G	W	R	N	V	S	R	L	L	V	F	T	S	D	D	T	F	H	T	A	G	D	G	K
Template Known Secondary structure								S									S	.	.		S								T	T							S	S	S	S	B																	T			S	S									S	S		B			T	T	G	G	G
Template Predicted Secondary structure																		.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
																							324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	G	I	D	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	L	S	E	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.				.	.																												.
Template Conservation																																																.				.	.																												.
Template Sequence		L	G	G	I	F	M	P	S	D	G	H	C	H	L	D	S	N	G	L	Y	S	R	S	T	E	F	D	Y	P	S	V	G	Q	V	A	Q	A	L	S	A	A	N	I	Q	P	I	.	F	A	V	.	.	T	S	A	A	L	P	V	Y	Q	E	L	S	K	L	I	P	K	S	A	V	G	E	L	S	E	D	S	.
Template Known Secondary structure		G	G	T			B				S	S			B		T	T	S	B	B	G	G	G	G	G	B																T					.				.	.		S	T	T									T	T	S	T	T								T	T		.
Template Predicted Secondary structure																																																.				.	.																												.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L
Query Conservation
Alig confidence		.																																																				.
Template Conservation		.																																																				.
Template Sequence		.	S	N	V	V	Q	L	I	M	D	A	Y	N	S	L	S	S	T	V	T	L	E	H	S	S	L	P	P	G	V	H	I	S	Y	E	S	Q	C	E	G	P	E	K	R	E	G	K	A	E	D	R	G	.	Q	C	N	H	V	R	I	N	Q	T	V	T	F	W	V	S	L	Q	A
Template Known Secondary structure		.		T													T	T											T	T					B					S	S	S								B	S	S		.				S			T	T
Template Predicted Secondary structure		.																																																				.
Template SS confidence
			357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions