Job Description P76481 Confidence 98.62% Date Thu Jan 5 12:23:23 GMT 2012 Rank 45 Aligned Residues 237 % Identity 16% Template c3k6sB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain Resolution 3.50 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	.	.	.	S	L	K	L	L	V	K	E	L	R	E	Q	D	N	I	A	I	V	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.							.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		T	F	R	R	A	K	G	Y	P	I	D	L	Y	Y	L	M	D	L	S	Y	S	M	L	D	D	.	.	L	R	N	V	K	K	L	G	G	D	L	L	R	A	L	N	E	I	T	E	S	G	R	I	G	F	G	S	F	V	D	K	T	V	L	P	F	V	N	T	H	P	D	K	L	R	N	P	C	P	N	K	E
Template Known Secondary structure																				S	S	T	T				.	.			T	T	T	T			T	T							S	S			S												S	S	T	T	S	S			S	S	T	T	T	T					S
Template Predicted Secondary structure																											.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
							259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.	.	.																																														.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																														.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	A	G	D	S	R	I	A	L	P	S	I	S	G	S	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	.	.	.	.	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																														.	.	.	.																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.																																.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		K	E	C	Q	P	P	F	A	F	R	H	V	L	K	L	T	N	.	.	N	S	N	Q	F	Q	T	E	V	G	K	Q	L	I	S	G	N	L	D	A	P	E	G	G	L	D	A	M	M	Q	V	A	A	C	P	E	E	I	G	W	R	N	V	T	R	L	L	V	F	A	T	D	D	G	F	H	F	A	G	D	G
Template Known Secondary structure									S									S	.	.		S									T	S						S	S	S	S											T	T									S	S									S	S					T	T	G	G
Template Predicted Secondary structure																			.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
																						323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	V	G	I	D	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	L	S	E	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.				.	.
Template Conservation																																																.				.	.
Template Sequence		K	L	G	A	I	L	T	P	N	D	G	R	C	H	L	E	D	N	L	Y	K	R	S	N	E	F	D	Y	P	S	V	G	Q	L	A	H	K	L	A	E	N	N	I	Q	P	I	.	F	A	V	.	.	T	S	R	M	V	K	T	Y	E	K	L	T	E	I	I	P	K	S	A	V	G	E	L	S	E	D	S	S
Template Known Secondary structure		G	G	G	T							S					S	S	S	B		S	S	G	G	G	S					G	G	G								T	T		B			.				.	.		G	G	G											S	S	S								T	T
Template Predicted Secondary structure																																																.				.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L
Query Conservation
Alig confidence			.	.																																											.	.	.
Template Conservation			.	.																																											.	.	.
Template Sequence		N	.	.	V	V	Q	L	I	K	N	A	Y	N	K	L	S	S	R	V	F	L	D	H	N	A	L	P	D	T	L	K	V	T	Y	D	S	F	C	S	N	G	V	T	H	R	.	.	.	N	Q	P	R	G	D	C	D	G	V	Q	I	N	V	P	I	T	F	Q	V	K	V	T	A
Template Known Secondary structure		S	.	.		G	G	G	T	T	T						S	S						B	S				T	T							B			S	S	S			B		.	.	.	S		S	S				T	T			S	S
Template Predicted Secondary structure			.	.																																											.	.	.
Template SS confidence
		329			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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