Job Description P76481 Confidence 99.46% Date Thu Jan 5 12:23:23 GMT 2012 Rank 40 Aligned Residues 235 % Identity 17% Template c3fcuB_ PDB info PDB header:cell adhesion/blood clotting Chain: B: PDB Molecule:integrin beta-3; PDBTitle: structure of headpiece of integrin aiibb3 in open conformation Resolution 2.90 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																													.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	.	.	.	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.																	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		Q	V	R	Q	V	E	D	Y	P	V	D	I	Y	Y	L	M	D	L	S	Y	S	M	K	D	D	.	.	L	W	S	I	Q	N	L	G	T	K	L	A	T	Q	M	R	K	L	T	S	N	L	R	I	G	F	G	A	F	V	D	K	P	V	S	P	Y	M	Y	I	S	P	P	E	A	L	E	N	P	C	Y	D	M
Template Known Secondary structure							S													S	G	G	G	G	G	G	.	.																	T	T		S	S												S	S	T	T	T	S				S							T	T	G	G	G
Template Predicted Secondary structure																											.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
												263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.																				.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.																				.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	I	A	L	P	S	I	S	G	S	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	.	.	.	.	.	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.																				.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.									.	.																																.	.	.	.	.																				.	.	.	.	.
Template Conservation																				.	.
Template Sequence		K	T	T	C	L	P	M	F	G	Y	K	H	V	L	T	L	T	D	.	.	Q	V	T	R	F	N	E	E	V	K	K	Q	S	V	S	R	N	R	D	A	P	E	G	G	F	D	A	I	M	Q	A	T	V	C	D	E	K	I	G	W	R	N	D	A	S	H	L	L	V	F	T	T	D	A	K	T	H	I	A	L
Template Known Secondary structure		T	S							S									S	.	.											T							S	S	S	S	B																	T			S	S	S									S	S		B			T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
											323	.	.	.															.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	F	N	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	L
Query Conservation		.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.				.	.
Template Conservation																																																			.				.	.
Template Sequence		D	G	R	L	A	G	I	V	Q	P	N	D	G	Q	C	H	V	G	S	D	N	H	Y	S	A	S	T	T	M	D	Y	P	S	L	G	L	M	T	E	K	L	S	Q	K	N	I	N	L	I	.	F	A	V	.	.	T	E	N	V	V	N	L	Y	Q	N	Y	S	E	L	I	P	G	T	T	V	G	V	L	S	M
Template Known Secondary structure		G	G	G	G	G	T			S									T	T	T	T	B		T	T	T	T	T	S															T	T					.				.	.		G	G	G											S	T	T							S	S
Template Predicted Secondary structure																																																			.				.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L
Query Conservation
Alig confidence						.	.																																							.	.	.	.	.
Template Conservation						.	.																																							.	.	.	.	.
Template Sequence		D	S	S	N	.	.	V	L	Q	L	I	V	D	A	Y	G	K	I	R	S	K	V	E	L	E	V	R	D	L	P	E	E	L	S	L	S	F	N	A	T	C	L	N	N	.	.	.	.	.	E	V	I	P	G	L	K	S	C	M	G	L	K	I	G	D	T	V	S	F	S	I	E	A	K	V
Template Known Secondary structure						.	.										T	T											S			S	S										T	T		.	.	.	.	.					T									T	T
Template Predicted Secondary structure						.	.																																							.	.	.	.	.
Template SS confidence
		336	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions