Job Description P76481 Confidence 99.63% Date Thu Jan 5 12:23:23 GMT 2012 Rank 31 Aligned Residues 330 % Identity 14% Template c3eh2B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c Resolution 2.35 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Query Sequence		V	D	I	L	A	K	D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	.	.	.	.	.	.	.	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	T	V	D	Y	C	K	N	N	K	F	P	S	P	P	A	F	I	F	M	I	D	V	S	Y	N	A	I	R	T	G	L	V	R	L	L	C	E	E	L	K	S	L	L	D	F	L	P	R	E	G	G	A	E	E	S	A	I	R	V	G	F	V	T	Y	N	K	V	L	H	F	Y	N	Q	M	M	V	V	S
Template Known Secondary structure					G	G	G	S	G	G	G															S					T	T	T													G	G	G					T	T		S	S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
								266	.	.	.	270							.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.
Predicted Secondary structure		.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.																																								.
Query SS confidence		.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.																																								.
Query Sequence		.	.	.	.	.	.	L	P	S	I	S	.	.	.	.	.	.	G	S	H	K	A	E	I	N	A	A	I	D	S	L	.	.	.	.	.	.	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	.	N	V	G
Query Conservation		.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.																																								.
Alig confidence		.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.																												.	.	.										.
Template Conservation																																																																		.	.	.
Template Sequence		D	V	A	D	M	F	V	P	L	L	D	G	F	L	V	N	V	N	E	S	R	A	V	I	T	S	L	L	D	Q	I	P	E	M	F	A	D	T	R	E	T	E	T	V	F	V	P	V	I	Q	A	G	M	E	A	L	K	A	A	E	C	A	G	K	.	.	.	L	F	L	F	H	T	S	L	P	I	A	E	A
Template Known Secondary structure				S	S							S	S	S	S	B		T	T	T	S																T	T								S															T					.	.	.							S				S	S	S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.
		327	.	.	330																							.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence		I	D	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	L	.	.	.	S	E
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation
Template Sequence		P	G	K	L	K	N	R	D	D	R	K	L	I	N	T	D	K	E	K	T	L	F	Q	P	Q	T	G	A	Y	Q	T	L	A	K	E	C	V	A	Q	G	C	C	V	D	L	F	L	F	P	N	Q	Y	V	D	V	A	T	L	S	V	V	P	Q	L	T	G	G	S	V	Y	K	Y	A	S	F	Q	V	E	N	D
Template Known Secondary structure		T	T								T	T	S	T	T	S	T	T	S					S		S	S	T													T										S	S								T						T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L	N	G	Q	K	A	S	I
Query Conservation
Alig confidence																															.														.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																															.														.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	R	F	L	S	D	L	R	R	D	V	Q	K	V	V	G	F	D	A	V	M	R	V	R	T	S	T	G	.	I	R	A	V	D	F	F	G	A	F	Y	M	S	.	.	.	.	.	.	N	T	T	D	V	E	L	A	G	L	D	G	D	K	T	V	T	V	E	F	K	H	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															S														T	T	.								S	S		B		S	.	.	.	.	.	.	S	S	S									S	S										.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.														.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.							.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.		.	.	.	.	.	.	.	540
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		D	K	L	R	Y	A	P	D	N	K	L	A	K	S	D	K	T	K	E	L	A	W	L	K	I	R	W	K	Y	P	Q	G	K	E	S	Q	L	V	E	F	P	L	G	P	T	I	N	A	P	S	E	D	M	R	F	R	A	A	V	A	A	Y	G	Q	K	L	R	G	S	E	Y	.	L	N	N	T	S	W	Q	Q
Query Conservation																																																																									.
Alig confidence		.	.	.	.	.	.	.	.	.																																																															.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	D	D	R	L	N	E	E	S	G	A	L	L	Q	C	A	L	L	Y	T	S	C	A	G	Q	R	R	L	R	I	H	N	L	A	L	N	C	C	T	Q	L	A	D	L	Y	R	N	C	E	T	D	T	L	I	N	Y	M	A	K	F	A	Y	R	G	V	L	N	S	P	V	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S	S			B	T	T	T	B												T	T	S															S	S						T	T	B																	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	Q	W	A	Q	Q	A	K	G	E	D	P	Q	G	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	D	T	L	I	T	Q	C	A	Q	I	L	A	C	Y	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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