Phyre 2 alignment of P76481 with c3egxB

Job Description P76481
Confidence 99.62% Date Thu Jan 5 12:23:23 GMT 2012

Rank 32 Aligned Residues 276

% Identity 13% Template c3egxB_

PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1

Resolution 3.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.														.	.
Predicted Secondary structure																																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	L	A	K	D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	E	Q	.	.	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L
Query Conservation																																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	M	A	P	S	E	Y	M	L	R	P	P	Q	P	P	V	Y	L	F	V	F	D	V	S	H	N	A	V	E	T	G	Y	L	N	S	V	C	Q	S	L	L	D	N	L	D	L	L	P	G	N	T	R	T	K	I	G	F	I	T	F	D	S	T	I	H	F	Y	G	L	Q	E	S	L	S	Q	P	Q	M	L	I	V
Template Known Secondary structure				G	G	G		S	S	S													S							T												T	S	T	T	S	S			S										S	S	S								T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570

	267	.	.	270															.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence	P	S	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	K	A	E	I	N	A	A	I	D	S	L	.	.	.	.	.	.	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	N	V	G
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence	S	D	I	E	D	V	F	I	P	M	P	E	N	L	L	V	N	L	N	E	S	K	E	L	V	Q	D	L	L	K	T	L	P	Q	M	F	T	K	T	L	E	T	Q	S	A	L	G	P	A	L	Q	A	A	F	K	L	M	S	P	T	G	.	.	.	.	.	G	R	M	S	V	F	Q	T	Q	L	P	T	L	G
Template Known Secondary structure			T	T	S				S		S	S	S	S																		G	G	G	T	T	T	T																				T	T	T		.	.	.	.	.									S				S	S
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
	571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.						.	.	.	.	.	.	.	.	640	.	.	.	.	.

	327	.	.																			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.							.	380	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Query Sequence	I	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	.	.	.	.	.	.	L	S	E	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Template Conservation
Template Sequence	V	G	A	L	K	P	R	E	E	P	N	H	R	S	S	A	K	M	T	P	S	T	D	F	Y	K	K	L	A	L	D	C	S	G	Q	Q	V	A	V	D	L	F	L	L	S	G	Q	Y	S	D	L	A	S	L	G	C	I	S	R	Y	S	A	G	S	V	Y	Y	Y	P	S	Y	H	H	Q	H	N	P	V	Q	V
Template Known Secondary structure	T	T										S	S	S							S		S											T	T	T										S	S								T					T	T	T							T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
	646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.

	383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L	N	G	Q	K	A	S	I	D
Query Conservation
Alig confidence																													.														.	.	.	.	.	.
Template Conservation																													.														.	.	.	.	.	.
Template Sequence	Q	K	L	Q	K	E	L	Q	R	Y	L	T	R	K	I	G	F	E	A	V	M	R	I	R	C	T	K	G	.	L	S	I	H	T	F	H	G	N	F	F	V	R	.	.	.	.	.	.	S	T	D	L	L	S	L	P	N	V	N	P	D	A	G	Y	A	V	Q	M	S	V	E	E	S	L	T	D	T	Q	L	V
Template Known Secondary structure													S														T	T	.								S	S	S				.	.	.	.	.	.	S	S	S									T	T										S	S		T	T	S		S
Template Predicted Secondary structure																													.														.	.	.	.	.	.
Template SS confidence
	729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.		.	.	.	760	.	.	.	.	.	.	.	.	.							770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.

	463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	R	Y	A	P	D	N	K	L	A	K	S	D	K	T	K	E	L	A	W	L	K	I	R	W	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	F	Q	S	A	L	L	Y	T	S	S	K	G	E	R	R	I	R	V	H	T	L	C	L	P	V	V
Template Known Secondary structure											T	T	S
Template Predicted Secondary structure
Template SS confidence
	802	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions