Job Description P76481 Confidence 99.61% Date Thu Jan 5 12:23:23 GMT 2012 Rank 33 Aligned Residues 329 % Identity 14% Template c3eg9B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																.	.																																					.	.	.	.	.	.	.															.	.	.	.	.	.	.
Query SS confidence																.	.																																					.	.	.	.	.	.	.															.	.	.	.	.	.	.
Query Sequence		I	L	A	K	D	R	K	S	E	E	L	P	A	S	.	.	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	E	Q	D	.	.	.	.	.	.	.	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	.	.	.	.	.	.	.
Query Conservation																.	.																																					.	.	.	.	.	.	.															.	.	.	.	.	.	.
Alig confidence																.	.																																					.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	T	L	D	Y	C	R	K	S	K	P	P	N	P	P	A	F	I	F	M	I	D	V	S	Y	S	N	I	K	N	G	L	V	K	L	I	C	E	E	L	K	T	M	L	E	K	I	P	K	E	E	Q	E	E	T	S	A	I	R	V	G	F	I	T	Y	N	K	V	L	H	F	F	N	V	K	S	N	L	A
Template Known Secondary structure					G	G	G	S	G	G	G	S														S						T	T													G	G	G					T	T	S	S	S											S	S	S								T	T		S
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
																266	.	.	.	270							.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	S	I	S	.	.	.	.	.	.	G	S	H	K	A	E	I	N	A	A	I	D	S	L	.	.	.	.	.	.	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.															.	.	.	.	.	.																							.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		Q	P	Q	M	M	V	V	T	D	V	G	E	V	F	V	P	L	L	D	G	F	L	V	N	Y	Q	E	S	Q	S	V	I	H	N	L	L	D	Q	I	P	D	M	F	A	D	S	N	E	N	E	T	V	F	A	P	V	I	Q	A	G	M	E	A	L	K	A	A	.	.	.	D	C	P	G	K	L	F	I	F	H
Template Known Secondary structure		S									T	T	S						S	S	S	S	S	B		T	T	T	T															T	T	T																							.	.	.	T	S
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.				.	.	.	.	.	.	.	580	.	.
		320	.	.	.	.	.	.																								.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	D	F	N	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	L	P	T	A	E	A	P	G	K	L	K	N	R	D	D	K	K	L	V	N	T	D	K	E	K	I	L	F	Q	P	Q	T	N	V	Y	D	S	L	A	K	D	C	V	A	H	G	C	S	V	T	L	F	L	F	P	S	Q	Y	V	D	V	A	S	L	G	L	V	P	Q	L	T	G	G	T	L	Y	K	Y
Template Known Secondary structure			S				S	S	S	T	T											S	S		S		G	G	G	G	G	S		S	S	S												T	T										S	S								T						T	T
Template Predicted Secondary structure
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
		377	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		D	T	.	.	.	L	S	E	A	Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T
Query Conservation				.	.	.
Alig confidence				.	.	.																																	.														.	.	.	.	.	.																							.
Template Conservation																																							.														.	.	.	.	.	.																							.
Template Sequence		N	N	F	Q	M	H	L	D	R	Q	Q	F	L	N	D	L	R	N	D	I	E	K	K	I	G	F	D	A	I	M	R	V	R	T	S	T	G	.	F	R	A	T	D	F	F	G	G	I	L	M	N	.	.	.	.	.	.	N	T	T	D	V	E	M	A	A	I	D	C	D	K	A	V	T	V	E	F	K	H	.
Template Known Secondary structure		T	T																			S															T	T	.								S	S		B		S	.	.	.	.	.	.	S	S	S									S	S										.
Template Predicted Secondary structure																																							.														.	.	.	.	.	.																							.
Template SS confidence
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.							.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	N	G	Q	K	A	S	I	D	K	L	R	Y	A	P	D	N	K	L	A	K	S	D	K	T	K	E	L	A	W	L	K	I	R	W	K	Y	P	Q	G	K	E	S	Q	L	V	E	F	P	L	G	P	T	I	N	A	P	S	E	D	M	R	F	R	A	A	V	A	A	Y	G	Q	K	L	R	G	S	E	Y	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	K	L	S	E	D	S	G	A	L	I	Q	C	A	V	L	Y	T	T	I	S	G	Q	R	R	L	R	I	H	N	L	G	L	N	C	S	S	Q	L	A	D	L	Y	K	S	C	E	T	D	A	L	I	N	F	F	A	K	S	A	F	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S				T	T	T													T	T	S															S								T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	N	T	S	W	Q	Q	I	K	Q	W	A	Q	Q	A	K	G	E	D	P	Q	G	Y	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	H	Q	P	L	K	V	I	R	E	I	L	V	N	Q	T	A	H	M	L	A	C	Y	R	K
Template Known Secondary structure		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions