Job Description P76481 Confidence 99.61% Date Thu Jan 5 12:23:23 GMT 2012 Rank 34 Aligned Residues 272 % Identity 14% Template c3eg9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		Y	V	V	L	R	G	P	Q	M	P	L	I	F	L	Y	V	V	D	T	C	M	E	D	E	.	.	.	D	L	Q	A	L	K	E	S	M	Q	M	S	L	S	L	L	P	P	T	A	L	V	G	L	I	T	F	G	R	M	V	Q	V	H	E	L	G	C	E	G	I	S	K	S	Y	V	F	R	G	T	K	D	L
Template Known Secondary structure							S															S				.	.	.																S		T	T									S	S								S		T	T	T								T	T	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
																			266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290										.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	S	I	S	G	S	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	.	.	.	.	.	.	.	.	.	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																																						.
Template Sequence		S	A	K	Q	L	Q	E	M	L	G	L	S	K	V	S	N	R	F	L	Q	P	V	Q	K	I	D	M	N	L	T	D	L	L	G	E	L	Q	R	D	P	W	P	V	P	Q	G	K	R	P	L	R	S	S	G	V	A	L	S	I	A	V	G	L	L	E	C	T	F	.	P	N	T	G	A	R	I	M	M	F	I
Template Known Secondary structure										T	T							S	S	S																						S				T	T	B																			T	T	S	.		S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.
		320	.	.	.	.	.	.	.	.	.																												330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	D	F	N	V	G	I	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	P	A	T	Q	G	P	G	M	V	V	G	D	E	L	K	T	P	I	R	S	W	H	D	I	D	K	D	N	A	K	Y	V	K	K	G	T	K	H	F	E	A	L	A	N	R	A	A	T	T	G	H	V	I	D	I	Y	A	C	A	L	D	Q	T	G	L	L	E	M	K	C	C	P	N	L	T	G	G	Y
Template Known Secondary structure		S	S				S	S	S	S			S		S	B	T	T	S										T	T			T	T																			T										S	S			S					T						S	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		373	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.										.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																	.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																	.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	Y	I	D	T	.	.	L	S	E	A	Q	K	V	L	N	S	E	M	R	Q	M	L	.	.	.	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	.	.	.	.	.	.	.	.	.	H	F	N	N	D	N	V	D	A	G
Query Conservation								.	.																	.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence								.	.																	.	.	.																	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																													.
Template Sequence		M	V	M	G	D	S	F	N	T	S	L	F	K	Q	T	F	Q	R	V	F	T	K	D	M	H	G	Q	F	K	M	G	F	G	G	T	L	E	I	K	T	S	R	E	.	I	K	I	S	G	A	I	G	P	C	V	S	L	N	S	K	G	P	C	V	S	E	N	E	I	G	T	G	G	T	C	Q	W	K	I	C
Template Known Secondary structure						S		S	S	S										T	T		B		T	T	S		B	S													T	T	.								S	S									S	S	B		S	S			S	B		S		S
Template Predicted Secondary structure																																													.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L	N	G	Q	K	A	S	I	D	K	L	R	Y	A	P	D	N	K	L	A	K	S	D	K	T	K	E	L	A	W	L	K	I	R	W	K	Y	P	Q	G	K	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	S	P	T	T	T	L	A	I	Y	F	E	V	V	N	Q	H	N	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	Q	G	G	R	G	A	I	Q	F	V	T	Q	Y	Q	H	S	S	G	Q	R
Template Known Secondary structure					S	S													S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S													T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470															.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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