Job Description P76481 Confidence 99.86% Date Thu Jan 5 12:23:23 GMT 2012 Rank 15 Aligned Residues 171 % Identity 15% Template c2b2xB_ PDB info PDB header:immune system Chain: B: PDB Molecule:integrin alpha-1; PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab Resolution 2.20 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	L	P	S	I	S	G	S	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	N	G	G	A
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		L	D	I	V	I	V	L	D	G	S	N	S	I	Y	.	.	.	P	W	E	S	V	I	A	F	L	N	D	L	L	K	R	G	P	K	Q	T	Q	V	G	I	V	Q	Y	G	E	N	V	T	H	E	F	N	L	N	K	Y	S	E	E	V	L	V	A	A	N	K	I	V	Q	R	G	G	R	Q	T	M	T	A	L
Template Known Secondary structure											S	T	T			.	.	.													T	T			T	T	S									S	S	S							T	T	S										T	T							S	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.					.	.	.	.	.	.	.	.	370
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	N	V	G	I	D	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	.	.	.	.	M	V	R	I	A	D	V	G	N
Query Conservation																																																																					.	.	.	.
Alig confidence														.																		.	.	.	.																											.							.	.	.	.
Template Conservation														.																		.	.	.	.																											.
Template Sequence		G	I	D	T	A	R	K	E	A	F	T	E	.	A	R	G	A	R	K	V	M	V	I	V	T	D	G	E	S	H	.	.	.	.	D	N	Y	R	L	K	Q	V	I	Q	D	C	E	D	E	N	I	Q	R	F	S	I	A	I	L	G	.	H	Y	S	T	E	K	F	V	E	E	I	K	S	I	A	S	E	P	T
Template Known Secondary structure								T	T	T	S	S	G	.	G	G	T										S	S			T	.	.	.	.	T	G	G	G											T	T										T	.	T												T	T	S		S	S	T
Template Predicted Secondary structure														.																		.	.	.	.																											.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		371	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		G	N	Y	S	Y	.	I	D	T	L	S	E	A	Q	K	V	L	N	S	E	M	R	Q	M	L
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		E	K	H	F	F	N	V	S	D	E	L	A	L	V	T	I	V	K	A	L	G	E	R	I	F
Template Known Secondary structure		T	S	S					S	S	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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