Job Description P76481 Confidence 99.69% Date Thu Jan 5 12:23:23 GMT 2012 Rank 29 Aligned Residues 327 % Identity 14% Template c1pd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Resolution 2.60 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		I	L	A	K	D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	.	.	.	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	L	P	S	I	S	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	P	K	E	Y	T	L	R	Q	P	P	P	A	T	Y	C	F	L	I	D	V	S	Q	S	S	I	K	S	G	L	L	A	T	T	I	N	T	L	L	Q	N	L	D	S	I	P	N	H	D	E	R	T	R	I	S	I	L	C	V	D	N	A	I	H	Y	F	K	I	P	L	D	S	E	N	I	N	M	M	D
Template Known Secondary structure					G	G	G		S	S						B								S							T											T	T	T	T	T	S			T	T	S										S	S	S									G	G	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
																271	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																																													.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																																													.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	K	A	E	I	N	A	A	I	D	S	L	.	.	.	.	.	.	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	N	V	G	I	D	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																					.	.	.	.	.																				.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		I	A	D	L	E	E	P	N	S	M	V	V	S	L	K	A	C	R	Q	N	I	E	T	L	L	T	K	I	P	Q	I	F	Q	S	N	L	I	T	N	F	A	L	G	P	A	L	K	S	A	Y	H	L	I	G	.	.	.	.	.	G	V	G	G	K	I	I	V	V	S	G	T	L	P	N	L	G	I	G	K	L
Template Known Secondary structure					T	T			T	T	T	S			T	T	T	T															T	T	T																				T	.	.	.	.	.	T	T									S	S				S	S	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.						.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
			329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.						380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure		.																																																				.	.	.	.	.
Query SS confidence		.																																																				.	.	.	.	.
Query Sequence		.	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	L	.	.	.	.	.	S	E	A	Q	K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K
Query Conservation		.																																																				.	.	.	.	.
Alig confidence		.																																																				.	.	.	.	.
Template Conservation
Template Sequence		Q	R	D	S	F	Y	K	N	F	T	I	D	C	S	K	V	Q	I	T	V	D	L	F	L	A	S	E	D	Y	M	D	V	A	S	L	S	N	L	S	R	F	T	A	G	Q	T	H	F	Y	P	G	F	S	G	K	N	P	N	D	I	V	K	F	S	T	E	F	A	K	H	I	S	M	D	F	C	M	E	T	V
Template Known Secondary structure															T	T	T	T										S	S													T	T	T								T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L	N	G	Q	K	A	S	I	D	K	L	R	Y	A	P	D	N	K	L	A	K	S	D	K	T	K	E	L	A
Query Conservation
Alig confidence										.														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	A	R	G	S	T	G	.	L	R	M	S	R	F	Y	G	H	F	F	N	R	.	.	.	.	.	.	S	S	D	L	C	A	F	S	T	M	P	R	D	Q	S	Y	L	F	E	V	N	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	M	A	D	Y	C	Y	V
Template Known Secondary structure								T	T	.								S	S	S	B		S	.	.	.	.	.	.	S	S	S									S	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure										.														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		558	.	560	.	.	.	.	.		.	.	.	.	570	.	.	.	.	.	.	.	.							.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.																				.	.	.	.	.	.	.	610	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		W	L	K	I	R	W	K	Y	P	Q	G	K	E	S	Q	L	V	E	F	P	L	G	P	T	I	N	A	P	S	E	D	M	R	F	R	A	A	V	A	A	Y	G	Q	K	L	R	.	G	S	E	Y	L	N	N	T	S	W	Q	Q	I	K	Q	W	A	Q	Q	A	K	G	E	D	P	Q	G	Y	R	A	E
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		Q	V	A	V	L	L	S	L	N	N	S	Q	R	R	I	R	I	I	T	L	A	M	P	T	T	E	S	L	A	E	V	Y	A	S	A	D	Q	L	A	I	A	S	F	Y	N	S	K	A	V	E	K	A	L	N	S	S	L	D	D	A	R	V	L	I	N	K	S	V	Q	D	I	L	A	T	Y	K	K	E
Template Known Secondary structure										T	T	T															S								T	B																				T
Template Predicted Secondary structure
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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