Job Description P76481 Confidence 99.63% Date Thu Jan 5 12:23:23 GMT 2012 Rank 30 Aligned Residues 326 % Identity 13% Template c1m2vB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer Resolution 2.75 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		I	L	A	K	D	R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	.	.	.	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	L	P	S	I	S	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	P	K	E	Y	T	L	R	Q	P	P	P	A	T	Y	C	F	L	I	D	V	S	Q	S	S	I	K	S	G	L	L	A	T	T	I	N	T	L	L	Q	N	L	D	S	I	P	N	H	D	E	R	T	R	I	S	I	L	C	V	D	N	A	I	H	Y	F	K	I	P	L	D	Q	I	N	M	M	D	I	A
Template Known Secondary structure					G	G	G		S	S						B								S						S													T	T	T	T	S			T	T	S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
																			271	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	K	A	E	I	N	A	A	I	D	S	L	.	.	.	.	.	.	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	N	V	G	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		D	L	E	E	P	F	L	P	R	P	N	S	M	V	V	S	L	K	A	C	R	Q	N	I	E	T	L	L	T	K	I	P	Q	I	F	Q	S	N	L	I	T	N	F	A	L	G	P	A	L	K	S	A	Y	H	L	I	G	.	.	.	.	.	G	V	G	G	K	I	I	V	V	S	G	T	L	P	N	L	G	I
Template Known Secondary structure				S	S				S		S	S	S	S	S			T	T	T	T															T	S	S																				T	.	.	.	.	.	T	T									S	S				S	S	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.						.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
																					328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.						380	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V	G	N	G	N	Y	S	Y	I	D	T	L	.	.	.	.	.	S	E	A	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Template Conservation
Template Sequence		G	K	L	Q	R	R	N	E	N	T	S	K	E	T	A	Q	L	L	S	C	Q	D	S	F	Y	K	N	F	T	I	D	C	S	K	V	Q	I	T	V	D	L	F	L	A	S	E	D	Y	M	D	V	A	S	L	S	N	L	S	R	F	T	A	G	Q	T	H	F	Y	P	G	F	S	G	K	N	P	N	D	I	V
Template Known Secondary structure		T										T	T						T	S		S	S	T													T										S	S													T	T	T								S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	L	N	S	E	M	R	Q	M	L	I	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	H	F	N	N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L	T	L	N	G	Q	K	A	S	I	D	K
Query Conservation
Alig confidence																													.									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																													.									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Sequence		K	F	S	T	E	F	A	K	H	I	S	M	D	F	C	M	E	T	V	M	R	A	R	G	S	T	G	.	L	R	M	S	R	F	Y	G	.	.	.	.	.	.	H	F	F	N	R	S	S	D	L	C	A	F	S	T	M	P	R	D	Q	S	Y	L	F	E	V	N	V	D	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S														T	T	.								S	.	.	.	.	.	.	S	S	B		S	S	T	T									S	S											S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.		.	.	.	.	570	.	.	.							.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.		.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		L	R	Y	A	P	D	N	K	L	A	K	S	D	K	T	K	E	L	A	W	L	K	I	R	W	K	Y	P	Q	G	K	E	S	Q	L	V	E	F	P	L	G	P	T	I	N	A	P	S	E	D	M	R	F	R	A	A	V	A	A	Y	G	Q	K	L	R	G	S	E	Y	.	L	N	N	T	S	W	Q	Q	I	K
Query Conservation																																																																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	I	M	A	D	Y	C	Y	V	Q	V	A	V	L	L	S	L	N	N	S	Q	R	R	I	R	I	I	T	L	A	M	P	T	T	E	S	L	A	E	V	Y	A	S	A	D	Q	L	A	I	A	S	F	Y	N	S	K	A	V	E	K	A	L	N	S	S	L	D	D	A	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	B			S	S													T	T	T															S								T	B																				S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	A	Q	Q	A	K	G	E	D	P	Q	G	Y	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	I	N	K	S	V	Q	D	I	L	A	T	Y	K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions