Job Description P76481 Confidence 99.56% Date Thu Jan 5 12:23:23 GMT 2012 Rank 36 Aligned Residues 239 % Identity 18% Template c1m2oA_ PDB info PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex Resolution 2.50 Å

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		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	S	E	E	L	P	A	S	N	L	V	F	L	I	D	T	S	G	S	M	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	R	E	Q	D	N	I	A	I	V	T	Y	A	G	D	S	R	I	A	L	P	S	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		T	N	K	P	V	T	V	P	P	I	F	F	F	V	V	D	L	T	S	E	T	E	.	.	.	N	L	D	S	L	K	E	S	I	I	T	S	L	S	L	L	P	P	N	A	L	I	G	L	I	T	Y	G	N	V	V	Q	L	H	D	L	S	S	E	T	I	D	R	C	N	V	F	R	G	D	R	E	Y	Q	L
Template Known Secondary structure			S					S												S				.	.	.															T	S		T	T									S	S								S	S	S	S	S								T	T	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
																												271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290										.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	.	.	.	.	.	.	.	.	.	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																									.
Template Sequence		E	A	L	T	E	M	L	T	G	Q	K	P	T	V	T	P	F	S	L	N	R	F	F	L	P	L	E	Q	V	E	F	K	L	N	Q	L	L	E	N	L	S	P	D	Q	W	S	V	P	A	G	H	R	P	L	R	A	T	G	S	A	L	N	I	A	S	L	L	L	Q	G	C	.	Y	K	N	I	P	A	R	I
Template Known Secondary structure										S							S	S	S	G	G	G	G	S																T				S		S				T	T	B																					.		T	T	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.																												330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	A	T	D	G	D	F	N	V	G	I	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G	V	T	L	S	T	F	G	V	G	N	S	N	Y	N	E	A	M	M	V	R	I	A	D	V
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	F	A	S	G	P	G	T	V	A	P	G	L	I	V	N	S	E	L	K	D	P	L	R	S	H	H	D	I	D	S	D	H	A	Q	H	Y	K	K	A	C	K	F	Y	N	Q	I	A	Q	R	V	A	A	N	G	H	T	V	D	I	F	A	G	C	Y	D	Q	I	G	M	S	E	M	K	Q	L	T	D	S
Template Known Secondary structure						S	S				S	S	S	S			S		S	B	T	T	S											T			T	T																			T										S	S			S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.								.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.											.	430	.
Predicted Secondary structure																													.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	G	N	Y	S	Y	I	D	T	L	S	E	A	Q	K	V	L	N	S	E	M	R	Q	M	L	I	.	.	.	.	.	.	.	T	V	A	K	D	V	K	A	Q	I	E	F	N	P	A	W	V	T	E	Y	R	Q	I	G	Y	E	K	R	Q	L	R	V	E	.	.	.	.	.	.	.	.	.	.	H	F	N
Query Conservation																													.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.														.	.	.	.	.	.	.																.																		.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																																				.
Template Sequence		T	G	G	V	L	L	L	T	D	A	F	S	.	.	T	A	I	F	K	Q	S	Y	L	R	L	F	A	K	D	E	E	G	Y	L	K	M	A	F	N	G	N	M	A	V	K	T	S	K	D	.	L	K	V	Q	G	L	I	G	H	A	S	A	V	K	K	T	D	A	N	N	I	S	E	S	E	I	G	I	G	A
Template Known Secondary structure			T							S		T	T	.	.	S										T	T		B		T	T	S	S	B	S													T	T	.								S	S						S				S		B		S	S		S	S	B		S
Template Predicted Secondary structure														.	.																																				.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	N	V	D	A	G	D	I	G	A	G	K	H	I	T	L	L	F	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	T	W	K	M	A	S	L	S	P	Y	H	S	Y	A	I	F	F	E	I
Template Known Secondary structure			S									T	T
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions