Job Description P76481 Confidence 99.15% Date Thu Jan 5 12:23:23 GMT 2012 Rank 42 Aligned Residues 140 % Identity 16% Template c1jeqA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:ku70; PDBTitle: crystal structure of the ku heterodimer Resolution 2.70 Å

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		217	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260											.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure													.	.	.	.	.	.																					.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																					.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query Sequence		L	V	F	L	I	D	T	S	G	S	M	.	.	.	.	.	.	I	S	D	E	R	L	P	L	I	Q	S	S	L	K	L	L	V	K	E	L	.	.	.	R	E	Q	D	N	I	A	I	V	T	Y	A	G	.	.	.	.	.	.	.	.	.	.	D	S	R	I	A	L	P	S	I	S	G	S	.	.	.	.	.
Query Conservation													.	.	.	.	.	.																					.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Alig confidence													.	.	.	.	.	.																					.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		L	I	F	L	V	D	A	S	K	A	M	F	E	S	Q	S	E	D	E	L	T	P	F	D	M	S	I	Q	C	I	Q	S	V	Y	I	S	K	I	I	S	S	D	R	D	L	L	A	V	V	F	Y	G	T	E	K	D	K	N	S	V	N	F	K	N	I	Y	V	L	Q	E	L	D	N	P	G	A	K	R	I	L
Template Known Secondary structure									S	S	G	G	G	S			S	S	S	S																					T	T											S		S	S		B	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
								273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																										.	.
Query SS confidence		.	.	.	.	.	.																																																										.	.
Query Sequence		.	.	.	.	.	.	H	K	A	E	I	N	A	A	I	D	S	L	D	A	E	G	S	T	N	G	G	A	G	L	E	L	A	Y	Q	Q	A	T	K	G	F	I	K	G	G	I	N	R	I	L	L	A	T	D	G	D	F	N	V	G	I	D	D	.	.	P	K	S	I	E	S	M	V	K	K	Q	R	E	S	G
Query Conservation		.	.	.	.	.	.																																																										.	.
Alig confidence		.	.	.	.	.	.																																																										.	.
Template Conservation
Template Sequence		E	L	D	Q	F	K	G	Q	Q	G	Q	K	R	F	Q	D	M	M	G	H	G	S	D	Y	S	L	S	E	V	L	W	V	C	A	N	L	F	S	D	V	Q	F	K	M	S	H	K	R	I	M	L	F	T	N	E	D	N	P	H	G	N	D	S	A	K	A	S	R	A	R	T	K	A	G	D	L	R	D	T	G
Template Known Secondary structure					T	T	S												T		S																			T			S			S									S		S		T	T	S	S		T	T																T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	S	T	F	G	V	G	N	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	L	D	L	M	H	L	K	K	P	G
Template Known Secondary structure									B			T	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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