Job Description P56979 Confidence 99.93% Date Thu Jan 5 12:06:28 GMT 2012 Rank 4 Aligned Residues 164 % Identity 13% Template d1f44a2 SCOP info DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Lambda integrase-like, catalytic core Resolution 2.05

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		A	T	P	A	Y	L	L	A	P	E	V	S	A	L	L	F	Y	M	P	.	.	.	.	.	.	D	Q	R	H	H	M	L	F	A	T	L	W	N	T	G	M	R	I	G	E	A	R	M	L	T	P	E	S	F	D	L	D	G	V	R	P	F	V	R	I	L	S	E	K	V	R	A	R	R	G	R	P	P	K	D
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																																																		.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I	A	R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	G	V	E	K	A	L	.	.	.	.	.	.
Template Known Secondary structure																				T	T																														B	G	G	G					G	G	G															.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	R	L	V	P	L	T	D	I	S	Y	V	R	Q	M	E	S	W	M	I	T	T	R	P	R	R	R	E	P	L	W	A	V	T	D	E	T	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	W	L	K	Q	A	V	R	R	A	E	A	D	G	V	H	F	S	I	P	V	T	P
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S	T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G
Template Known Secondary structure		.	.	.	.	.																	G	G	G	S	T	T	S	B	S	S			B		T	T	S		B				S	S																						S			T	T			T	T	S	S			T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	F	R	H	S	Y	I	M	H	M	L	Y	H	R	Q	P	R	K	V	I	Q	A	L	A	G	H	R	D	P	R	S	M	E	V	Y	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I	P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	F	I	R
Template Known Secondary structure		T													T	T											T											T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions