Return to main results Retrieve Phyre Job Id

Job DescriptionP56979
Confidence18.25%DateThu Jan 5 12:06:28 GMT 2012
Rank25Aligned Residues32
% Identity9%Templatec2kkpA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171).
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.....
Predicted Secondary structure 













Query SS confidence 































Query Sequence  VIPLQNSPERVSLLPIAPGVDFATALSLRRMA
Query Conservation     
 
   
  
 
  
          
   
Alig confidence 































Template Conservation 
  

  

    
  

   
  

      
Template Sequence  LHEAMSQARESGLLLQNPTEAAKPPRHPLEHH
Template Known Secondary structure  TTTS
SS
GGGGS









Template Predicted Secondary structure 





















Template SS confidence 































   82.......90.........100.........110...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions