 |
Job Description | P56979 | Confidence | 6.23% | Date | Thu Jan 5 12:06:28 GMT 2012 |
Rank | 63 | Aligned Residues | 62 |
% Identity | 13% | Template | c2juhA_ |
PDB info |
PDB header:nuclear protein | Chain: A: PDB Molecule:telomere binding protein tbp1; |
PDBTitle: solution structure of dna binding domain of ngtrf1
|
Resolution | UNK |
|
 |
  |   |
26 | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
. | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | A | L | S | L | R | R | M | A | T | S | T | G | A | T | P | A | Y | L | L | A | P | E | V | S | A | L | L | F | Y | M | . |
. |
. |
P | D | Q | R | H | H | M | L | F | A | T | L | W | N | T | G | M | . |
R | I | G | E | A | R | M | L | T | P | E | S | F |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |   | . | . | . |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|
| . |
|   |   |
|
|   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|   |
|
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |
Template Sequence |   |
P | V | N | Q | K | S | K | R | S | E | L | S | Q | R | R | I | R | R | P | F | S | V | A | E | V | E | A | L | V | E | A | V | E | H | L | G | T | G | R | W | R | D | V | K | M | R | A | F | D | N | A | D | H | R | T | Y | V | D | L | K | D | K | W | K | T | L |
Template Known Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| S | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G |
|  |  |  |  |  |  |  |  |
| S |
|
| S | S |
|
| S |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
561 | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|