Job Description P56979 Confidence 66.33% Date Thu Jan 5 12:06:28 GMT 2012 Rank 15 Aligned Residues 135 % Identity 11% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.											.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																	.		.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.		.	.	.	.	.	.	.	.	.	.
Query Sequence		H	M	L	F	A	T	L	W	N	T	G	M	R	I	G	.	E	.	.	.	.	.	.	.	.	.	.	A	R	M	L	T	P	E	S	F	D	L	D	G	V	R	P	F	V	R	I	L	S	E	K	V	R	A	R	R	G	R	P	P	K	D	E	V	R	L	V	P	L	T	D	I	S	Y	V	R	Q	M	E	S
Query Conservation																	.		.	.	.	.	.	.	.	.	.	.
Alig confidence																	.		.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.
Template Sequence		A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	.	.	.	.	.	.	.	.	.	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K
Template Known Secondary structure																													S	T	T		B	G	G	G					S	S									G	G	G					.	.	.	.	.	.	.	.	.					T	T	S	T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.										.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	M	I	T	T	R	P	R	R	R	E	P	L	W	A	V	T	D	E	T	M	R	N	W	L	K	Q	A	V	R	R	A	E	A	D	G	V	H	F	S	I	P	V	T	P	H	T	F	R	H	S	Y	I	M	H	M	L	Y	H	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.											.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template Sequence		L	T	D	D	S	S	P	E	E	F	L	F	N	K	L	S	E	.	.	.	.	.	.	.	.	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L
Template Known Secondary structure					T	T		T	T	S	B	T	T	T	T				.	.	.	.	.	.	.	.								G	G	G	.	.	.	.	.	.	T																										S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	K	V	I	Q	A	L	A	G	H	R	D	P	R	S	M	E	V	Y	T	R	V	F	A	L	D	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	K	Q	T	A	E	V	V	G	H	T	P	S	I	S	K	R	A	M	A	T	T	I	L	E	M	V
Template Known Secondary structure											T	S																	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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