Return to main results Retrieve Phyre Job Id

Job DescriptionP56979
Confidence99.88%DateThu Jan 5 12:06:28 GMT 2012
Rank6Aligned Residues192
% Identity14%Templatec1z1bA_
PDB info PDB header:dna binding protein/dnaChain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50....... ..60.........70.........80....
Predicted Secondary structure 
























..






Query SS confidence 


















































. .


























Query Sequence  LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM. . PDQRHHMLFATLWNTGMRIGEARMLTP
Query Conservation 
 
   
  
 
  
          
         
  

  

  

   ..   
   
  

  



  

  
  
Alig confidence 



























........














..


























Template Conservation                              ........                               

 
  
   
  
Template Sequence  AFREAIAEGHITTNHVAATRAAKSKVRR. . . . . . . . SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKW
Template Known Secondary structure  TTS
SS
TTTTS







B........



TTSS



TT
BG
Template Predicted Secondary structure 























........














Template SS confidence 















































































   150.........160.........170....... ..180.........190.........200.........210.........220.
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  ESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAE
Query Conservation   

        
                                
                                   
Alig confidence 
























.......















































Template Conservation   


     
               .......                                                
Template Sequence  SDIVDGYLYVEQSKTGVKIAIPTAL. . . . . . . HIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARK
Template Known Secondary structure  GGTT
TTT

TT
.......TTTTT
SSBSS

TTS



Template Predicted Secondary structure 










.......

















Template SS confidence 















































































   222.......230.........240...... ...250.........260.........270.........280.........290....
 
   165... .170.........180.........190.........200.........210....
Predicted Secondary structure 
.


















Query SS confidence 



.













































Query Sequence  ADGV. HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR
Query Conservation      .     

 
 



 

 
   
     
   


 
  

  
  
Alig confidence 



.












.































Template Conservation    

       
 
 


. 

 
   
     
   


     
  

 
Template Sequence  ASGLSFEGDPPTFHELRS. LSARLYEKQISDKFAQHLLGHKSDTMASQRDD
Template Known Secondary structure  T


SSB


TT.T
T
SST



Template Predicted Secondary structure 












.







Template SS confidence 


















































   295....300.........310.. .......320.........330.........340....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions