Job Description P56979 Confidence 99.88% Date Thu Jan 5 12:06:28 GMT 2012 Rank 6 Aligned Residues 192 % Identity 14% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		L	Q	N	S	P	E	R	V	S	L	L	P	I	A	P	G	V	D	F	A	T	A	L	S	L	R	R	M	A	T	S	T	G	A	T	P	A	Y	L	L	A	P	E	V	S	A	L	L	F	Y	M	.	.	P	D	Q	R	H	H	M	L	F	A	T	L	W	N	T	G	M	R	I	G	E	A	R	M	L	T	P
Query Conservation																																																					.	.
Alig confidence																														.	.	.	.	.	.	.	.																.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		A	F	R	E	A	I	A	E	G	H	I	T	T	N	H	V	A	A	T	R	A	A	K	S	K	V	R	R	.	.	.	.	.	.	.	.	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W
Template Known Secondary structure									T	T	S		S	S		T	T	T	T	S									B	.	.	.	.	.	.	.	.															T	T	S	S																						T	T		B	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.									.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	F	D	L	D	G	V	R	P	F	V	R	I	L	S	E	K	V	R	A	R	R	G	R	P	P	K	D	E	V	R	L	V	P	L	T	D	I	S	Y	V	R	Q	M	E	S	W	M	I	T	T	R	P	R	R	R	E	P	L	W	A	V	T	D	E	T	M	R	N	W	L	K	Q	A	V	R	R	A	E
Query Conservation
Alig confidence																											.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.
Template Sequence		S	D	I	V	D	G	Y	L	Y	V	E	Q	S	K	T	G	V	K	I	A	I	P	T	A	L	.	.	.	.	.	.	.	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K
Template Known Secondary structure		G	G			T	T							T	T	T								T	T		.	.	.	.	.	.	.			T	T	T	T														T		S	S	B	S	S			T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		165	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	D	G	V	.	H	F	S	I	P	V	T	P	H	T	F	R	H	S	Y	I	M	H	M	L	Y	H	R	Q	P	R	K	V	I	Q	A	L	A	G	H	R	D	P	R	S	M	E	V	Y	T	R
Query Conservation						.
Alig confidence						.														.
Template Conservation																				.
Template Sequence		A	S	G	L	S	F	E	G	D	P	P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D
Template Known Secondary structure				T				S	S	B				T	T					.										T										T		S	S					T
Template Predicted Secondary structure																				.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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