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Job DescriptionP56979
Confidence99.87%DateThu Jan 5 12:06:28 GMT 2012
Rank8Aligned Residues205
% Identity10%Templatec1ma7A_
PDB info PDB header:hydrolase, ligase/dnaChain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20........ .30.........40.........50........ .60.........70......
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Query Sequence  VIPLQNSPERVSLLPIAPGVDFATA. LSLRRMATSTGATPAYLLAPEVSALLFYMP. . . . . . DQRHHMLFATLWNTGMRI
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Template Sequence  LNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRI
Template Known Secondary structure  TTTS

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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   77..80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM. . . .
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Template Sequence  AEIARIRVKDISRTDGGRMLIHIGRTKTLVS. . . . . . TAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVA
Template Known Secondary structure  S
BSSSSTTTTS





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   175....180.........190.........200..... ....210.........220.........230.........240........
 
   153......160.........170.........180.........190.........200.........210....
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Query Sequence  . . . . . . . . . . . . . . . . RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR
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Template Sequence  APSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIR
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   249250.........260.........270.........280.........290.........300.........310.........320......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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