Job Description P29744 Confidence 100.00% Date Thu Jan 5 11:45:40 GMT 2012 Rank 4 Aligned Residues 234 % Identity 19% Template c3k8wA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 Resolution 1.70 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	I	A	A	S	Q	A	V	V	L	S	Q	A	Q	A	Q	N	S	Q	Y	T	L	A	R	T	F	A	T	Q	K	V	S	L	E	E	S	V	L	S	Q	V	T	T	A	I	Q	N	A	Q	E	K	I	V	Y	A	S	N	G	T	L	S	D	D	D	R	A	S	L	A	T	D	I	Q	G	L	R	D	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	G	L	A	I	S	D	R	M	T	A	Q	I	K	G	L	T	Q	A	Q	R	N	A	N	D	G	I	S	L	A	Q	T	A	E	G	A	L	G	E	I	S	N	N	L	Q	R	I	R	E	L	A	V	Q	A	S	N	G	T	N	T	Q	T	D	R	D	A	L	Q	A	E	V	T	Q	L	Q	S	E	I
Template Known Secondary structure																																																										T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	N	L	A	N	T	T	D	G	N	G	R	Y	I	F	A	G	Y	K	T	E	T	A	P	F	S	E	E	K	G	K	Y	V	G	G	A	E	S	I	K	Q	Q	V	D	A	S	R	S	M	V	I	G	H	T	G	D	K	I	F	D	S	I	T	S	N	A	V	A	E	P	D	G	S	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	V	A	E	Q	T	S	F	N	G	Q	K	L	L	D	G	S	F	N	G	V	Q	F	Q	I	G	A	N	A	G	E	T	I	G	V	S	K	I	M	N	A	Q	T	A	S	L	G	G	S	L	T	R	T	T	S	T	I	D	A	T	D	L	T	K	Y	D	T	A	M	A	A	G	D	L	T	I	N	G	V
Template Known Secondary structure											T	T				S	S	S										S	S	S	T	T												S	T	T	T	T	T												G	G	G		T	T	T	T	S		B		T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
																																																									195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	E	T	N	L	F	A	M	L	D	S	A	I	A	A	L	K	T	P	V	A	D	S	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	G	K	I	D	A	A	S	T	A	Q	E	R	A	A	Q	L	T	E	A	I	N	R	V	S	S	Q	T	N	V	G	A	S	Y	D	K	T	T	G	Q	V	T	L	T	S	N	A	A	I	A	V	A	G	A	A	N	D	A	T	V	A	G	W	A	N	N	A	T	T	G	T	A	T	T	T	T	G	I	N
Template Known Secondary structure						B				S	S															T					S							T	T	T	T							S	S						S	S								S	S							S							S	S	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	K	E	T	A	A	A	A	L	D	K	T	N	R	G	L	K	N	S	L	N	N	V	L	T	V	R	A	E	L	G	T	Q	L	N	E	L	E	S	L	D	S	L	G	S	D	R	A	L	G	Q	T	Q	Q	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	T	V	S	S	F	T	N	A	Q	Q	T	I	T	Q	I	D	N	A	L	K	D	I	N	T	A	R	A	D	L	G	A	V	Q	N	R	F	T	S	T	V	A	N	L	Q	S	M	T	E	N	L	S	S	A	L
Template Known Secondary structure		T				S	S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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